View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0611_high_15 (Length: 492)
Name: NF0611_high_15
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_high_15 |
 | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
| [»] scaffold0096 (1 HSPs) |
| | |
|
| [»] scaffold0157 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 30 - 464
Target Start/End: Complemental strand, 1616040 - 1615605
Alignment:
| Q |
30 |
attcaatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggat |
129 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
1616040 |
attcaatcatccttatatccaatctttgttaacattgttaatgactttgtaaccattaaatctaaatggtttttgctccaaacaagggagatcgttggat |
1615941 |
T |
|
| Q |
130 |
cgcatcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctatacaccaaattccaatatagct |
228 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1615940 |
cgcatcatttggctaagcatgcatctcatcctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctatacaccaaattccaatatagct |
1615841 |
T |
|
| Q |
229 |
tatagtgtaaatatacacctaaatggttttttcttgggttttgattcgtctccacttaatccagttgcagcttagcggcttttattctactaattgctct |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1615840 |
tatagtgtaaatatacacctaaatggttttttcttgggttttgattcgtctccacttaatccagttgcagcttagcggcttttattctactatttgctct |
1615741 |
T |
|
| Q |
329 |
ggtctgcaagttctatagttcagaaaaattatttttaaattatatttatgttggttgtttgtattgaattatcttgctttttggttcttctaacagttta |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1615740 |
ggtctgcaagttctatagttcagaaaaattatttttaaattatatttatgttggttgtttgtattgaattatcttgctttttggttcttctaacagttta |
1615641 |
T |
|
| Q |
429 |
gttttctattttaaacaaatttaacaccaccaacat |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
1615640 |
gttttctattttaaacaaatttaacaccaccaacat |
1615605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 35 - 207
Target Start/End: Complemental strand, 18355434 - 18355260
Alignment:
| Q |
35 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca |
133 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| ||| || | ||||||||||||||||| ||| |||| ||||||||||||||||||| || |
|
|
| T |
18355434 |
atcatacttatatttaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggtcgttggatctca |
18355335 |
T |
|
| Q |
134 |
tcatttggctaaacatgcatctcat-ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
207 |
Q |
| |
|
|||||||||||| |||||||||||| |||| ||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18355334 |
tcatttggctaagcatgcatctcatcctttaatctaatctgagtcaaattttcaaatttgatgtatatttcctat |
18355260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 34 - 207
Target Start/End: Complemental strand, 23349102 - 23348927
Alignment:
| Q |
34 |
aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgc |
132 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| ||| || | ||||||||||||||||| ||| |||| ||||||||| ||||||||| | |
|
|
| T |
23349102 |
aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctc |
23349003 |
T |
|
| Q |
133 |
atcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
207 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23349002 |
atcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctat |
23348927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 50 - 207
Target Start/End: Original strand, 12741703 - 12741862
Alignment:
| Q |
50 |
aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaaca |
148 |
Q |
| |
|
||||||||||||||||| |||||| ||| || | ||||||||||||||||| ||| |||| ||| ||||| ||||||||| |||||||||||||| || |
|
|
| T |
12741703 |
aatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaaaggaggccgttggatctcatcatttggctaagca |
12741802 |
T |
|
| Q |
149 |
tgcatctcatc-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
207 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12741803 |
tgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctat |
12741862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 35 - 194
Target Start/End: Complemental strand, 10329013 - 10328851
Alignment:
| Q |
35 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgct-tcaaacaagggaggtcgttggatcgca |
133 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||| ||| || | ||||||||||| ||||| | | | |||||||||||| ||||||||| || |
|
|
| T |
10329013 |
atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaattgttttggttctaaaacaagggaggccgttggatctca |
10328914 |
T |
|
| Q |
134 |
tcatttggctaaacatgcatctcatc--tttgatctaatttgagtcaaactttcaaatttgat |
194 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||| ||||||||| || ||||||||| |
|
|
| T |
10328913 |
tcatttggctaagcatgcatctcatccttttgatctaatctgagtcaaatttgaaaatttgat |
10328851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 108 - 238
Target Start/End: Original strand, 24454588 - 24454720
Alignment:
| Q |
108 |
caaacaagggaggtcgttggatcgcatcatttggctaaacatgcatctcatc-tttgatctaatttgagt-caaactttcaaatttgatgtatatttcct |
205 |
Q |
| |
|
||||||||| || ||||||||| |||||||||||| |||| ||||||||| ||||||||||| ||| | |||||||||||||||||||| | |||||| |
|
|
| T |
24454588 |
caaacaaggagggccgttggatctcatcatttggcttgacattcatctcatcctttgatctaatctgacttcaaactttcaaatttgatgtctttttcct |
24454687 |
T |
|
| Q |
206 |
atacaccaaattccaatatagcttatagtgtaa |
238 |
Q |
| |
|
|| |||| |||||| |||||||||||||||||| |
|
|
| T |
24454688 |
atgcaccgaattcccatatagcttatagtgtaa |
24454720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 421 - 464
Target Start/End: Original strand, 24455046 - 24455089
Alignment:
| Q |
421 |
acagtttagttttctattttaaacaaatttaacaccaccaacat |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24455046 |
acagtttagttttctattttaaacaaatttaacaccaccaacat |
24455089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 4e-64; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 35 - 238
Target Start/End: Complemental strand, 27541679 - 27541475
Alignment:
| Q |
35 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgcat |
134 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||| || | ||||||||||||| ||| ||| ||||||||||| | ||||||||| ||| |
|
|
| T |
27541679 |
atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggctttggctccaaacaagggacgccgttggatctcat |
27541580 |
T |
|
| Q |
135 |
catttggctaaacatgcatctcat-ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctatacaccaaattccaatatagcttatag |
233 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
27541579 |
catttggctaagcatgcatctcatcctttgatctaatctgaatcaaactttcaaatttgatgtatatttcctatgcaccaaattcccatatagcttatag |
27541480 |
T |
|
| Q |
234 |
tgtaa |
238 |
Q |
| |
|
||||| |
|
|
| T |
27541479 |
tgtaa |
27541475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 35 - 207
Target Start/End: Complemental strand, 14678142 - 14677968
Alignment:
| Q |
35 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca |
133 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||| || | ||||||||||||||||| ||| |||| ||||||||| ||||||||| || |
|
|
| T |
14678142 |
atcatacttatatctaatctttgttaacattgctaatgactttgaaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca |
14678043 |
T |
|
| Q |
134 |
tcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
207 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14678042 |
tcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttaatgtatatttcctat |
14677968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 35 - 207
Target Start/End: Original strand, 5657771 - 5657945
Alignment:
| Q |
35 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca |
133 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| ||||||||||| || | ||||||||||| ||||| ||| |||| ||||||||| ||||||||| || |
|
|
| T |
5657771 |
atcatacttatatctaatctttgttaacgttgctaatgactttgcaaaccctaaacctaaatagttttggctccaaaacaagggaggccgttggatctca |
5657870 |
T |
|
| Q |
134 |
tcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
207 |
Q |
| |
|
|||||||| ||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5657871 |
tcatttggttaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat |
5657945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 35 - 207
Target Start/End: Complemental strand, 31100993 - 31100819
Alignment:
| Q |
35 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca |
133 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||| ||| |||| ||||||||| |||| |||| || |
|
|
| T |
31100993 |
atcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaatggttttggctccaaaacaagggaggccgttcgatctca |
31100894 |
T |
|
| Q |
134 |
tcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
207 |
Q |
| |
|
|||||||| ||| |||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31100893 |
tcatttggttaagcatgtatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat |
31100819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 23738657 - 23738700
Alignment:
| Q |
35 |
atcatacttatattcaatctttgttaacattgttaatgactttg |
78 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
23738657 |
atcatacttatatctaatctttgttaacattgctaatgactttg |
23738700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 33 - 207
Target Start/End: Original strand, 35061 - 35237
Alignment:
| Q |
33 |
caatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcg |
131 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| || | ||||||||||||||||| ||| |||| |||||||||| |||||||| |
|
|
| T |
35061 |
caatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggttgttggatct |
35160 |
T |
|
| Q |
132 |
catcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
207 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35161 |
catcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat |
35237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 34 - 207
Target Start/End: Original strand, 1262087 - 1262262
Alignment:
| Q |
34 |
aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgc |
132 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||| || | ||||||||||||||||| ||| |||| ||||||| | ||||||||| | |
|
|
| T |
1262087 |
aatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaagccgttggatctc |
1262186 |
T |
|
| Q |
133 |
atcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
207 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1262187 |
atcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat |
1262262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 34 - 207
Target Start/End: Complemental strand, 48849929 - 48849754
Alignment:
| Q |
34 |
aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgc |
132 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||| |||| ||||||| | |||||||| | |
|
|
| T |
48849929 |
aatcatacttatatctaatctttgttaacattgctaatgactttgtaaatcctaaacctaaatggttttggctccaaaacaagggattttgttggatctc |
48849830 |
T |
|
| Q |
133 |
atcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
207 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
48849829 |
atcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat |
48849754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 29 - 207
Target Start/End: Complemental strand, 43071509 - 43071329
Alignment:
| Q |
29 |
aattcaatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttgg |
127 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||| |||||| ||| || | ||||||||||||||||| ||| |||| ||||||||| |||||| |
|
|
| T |
43071509 |
aattctatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttgg |
43071410 |
T |
|
| Q |
128 |
atcgcatcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
207 |
Q |
| |
|
||| |||||||||||||| ||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
43071409 |
atctcatcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctat |
43071329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 34 - 207
Target Start/End: Complemental strand, 26910103 - 26909928
Alignment:
| Q |
34 |
aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgc |
132 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||| |||||| || | ||||||||||||| ||| ||| |||| |||||||| | ||||||| |
|
|
| T |
26910103 |
aatcatacttatatctaatctttgttaacattgctaataactttgcaaaccctaaacctaaatggatttggctccaaaacaagggagaccattggatctt |
26910004 |
T |
|
| Q |
133 |
atcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
207 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26910003 |
atcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat |
26909928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 35 - 207
Target Start/End: Complemental strand, 22009649 - 22009475
Alignment:
| Q |
35 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca |
133 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||| |||| || | ||||||||||||||||| ||| |||| ||||||||| ||||||||| || |
|
|
| T |
22009649 |
atcatacttatatctaatctttgttaacattgctaatgaatttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca |
22009550 |
T |
|
| Q |
134 |
tcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
207 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
22009549 |
tcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat |
22009475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 33 - 207
Target Start/End: Original strand, 9043800 - 9043976
Alignment:
| Q |
33 |
caatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcg |
131 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||| ||| || | ||||||||||||||||| ||| |||| ||||||||| ||||||||| |
|
|
| T |
9043800 |
caatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatct |
9043899 |
T |
|
| Q |
132 |
catcatttggctaaacatgcatctcat-ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
207 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||| ||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
9043900 |
catcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaatttttaaatttgatgtatatttcctat |
9043976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 35 - 207
Target Start/End: Complemental strand, 7473610 - 7473436
Alignment:
| Q |
35 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca |
133 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||| ||| || | ||||||||||||||||| ||| |||| ||||||||| ||||||||| || |
|
|
| T |
7473610 |
atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca |
7473511 |
T |
|
| Q |
134 |
tcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
207 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7473510 |
tcatttagctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctat |
7473436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 36 - 207
Target Start/End: Complemental strand, 30442667 - 30442494
Alignment:
| Q |
36 |
tcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcat |
134 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| |||||| ||| || | ||||||||||||||||| ||| |||| ||||||||| ||||||||| ||| |
|
|
| T |
30442667 |
tcatgcttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat |
30442568 |
T |
|
| Q |
135 |
catttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
207 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30442567 |
catttggctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctat |
30442494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 19085498 - 19085420
Alignment:
| Q |
35 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaaca |
113 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||| || | ||||||||||||||||| ||| |||||| |
|
|
| T |
19085498 |
atcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaca |
19085420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 26841070 - 26840989
Alignment:
| Q |
50 |
aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatc |
130 |
Q |
| |
|
||||||||||||||||| |||||| |||| || | ||||||||||||||||| ||| | ||||||||||| ||||||||| |
|
|
| T |
26841070 |
aatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatc |
26840989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 7e-47; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 34 - 207
Target Start/End: Original strand, 31685076 - 31685251
Alignment:
| Q |
34 |
aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaac-aagggaggtcgttggatcgc |
132 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| ||||||||||| || | ||||||||||||||||| ||| |||| |||||||| ||||| ||| | |
|
|
| T |
31685076 |
aatcatacttatatctaatctttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttgaatctc |
31685175 |
T |
|
| Q |
133 |
atcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
207 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31685176 |
atcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat |
31685251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 35 - 207
Target Start/End: Complemental strand, 53973407 - 53973233
Alignment:
| Q |
35 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca |
133 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||| ||| || | ||||||||||||||||| ||| |||| ||||||||| ||||||||| || |
|
|
| T |
53973407 |
atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaatcaagggaggccgttggatctca |
53973308 |
T |
|
| Q |
134 |
tcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
207 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53973307 |
tcatttggctaagcctgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctat |
53973233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 35 - 210
Target Start/End: Original strand, 17681767 - 17681944
Alignment:
| Q |
35 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgcat |
134 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||| || | ||||||||||||||||| ||| |||||||||| || ||||||||| ||| |
|
|
| T |
17681767 |
atcatacttatatctaatctttgttaacattgttaatgattttgcaaaccctaaacctaaatggttttggctccaaacaaggggggccgttggatctcat |
17681866 |
T |
|
| Q |
135 |
catttggctaaacatgcatctcat-ctttgatctaat-ttgagtcaaactttcaaatttgatgtatatttcctataca |
210 |
Q |
| |
|
||||||| ||| |||||||||||| |||||||||||| |||||||||| ||| |||||| |||||||||||| ||||| |
|
|
| T |
17681867 |
catttggttaagcatgcatctcatcctttgatctaatcttgagtcaaatttttaaatttaatgtatatttcccataca |
17681944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 50 - 207
Target Start/End: Complemental strand, 19882217 - 19882058
Alignment:
| Q |
50 |
aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaaca |
148 |
Q |
| |
|
||||||||||||||||| |||||| |||||| | ||||||||||||||||| ||| |||| |||||||| ||||||||| |||||||||||||| || |
|
|
| T |
19882217 |
aatctttgttaacattgctaatgaaattgtaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcatttggctaagca |
19882118 |
T |
|
| Q |
149 |
tgcatctcatc-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
207 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19882117 |
tgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctat |
19882058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 34 - 207
Target Start/End: Original strand, 37982348 - 37982523
Alignment:
| Q |
34 |
aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgc |
132 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| ||| || | ||||||||||||||||| ||| |||| |||||||| ||||||||| | |
|
|
| T |
37982348 |
aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctc |
37982447 |
T |
|
| Q |
133 |
atcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
207 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37982448 |
atcatttggctaagcatgcatctcatcctttaatctaatctgagtcaaattttcaaatttgatgtatatttcctat |
37982523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 35 - 172
Target Start/End: Complemental strand, 12538756 - 12538618
Alignment:
| Q |
35 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgcat |
134 |
Q |
| |
|
||||||||||||| ||||||||||||| || |||||| |||| || | ||||||||||||||||| ||| ||||||||||||| ||||||||| ||| |
|
|
| T |
12538756 |
atcatacttatatctaatctttgttaacctttctaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctcat |
12538657 |
T |
|
| Q |
135 |
catttggctaaacatgcatctcat-ctttgatctaattt |
172 |
Q |
| |
|
||||||||||| |||||||| ||| |||||||||||||| |
|
|
| T |
12538656 |
catttggctaagcatgcatcacatcctttgatctaattt |
12538618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 176
Target Start/End: Original strand, 2549937 - 2550079
Alignment:
| Q |
35 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgca |
133 |
Q |
| |
|
||||||||||||| |||||| ||||||||| ||||||||||| || | |||||||||||| |||| ||| | |||||||||||| ||||||||| | |
|
|
| T |
2549937 |
atcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaaatgattttggctccaaaacaagggaggccgttggatc-ta |
2550035 |
T |
|
| Q |
134 |
tcatttggctaaacatgcatctcat-ctttgatctaatttgagt |
176 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| |||| ||||| |
|
|
| T |
2550036 |
tcatttggctaagcatgcatctcatcctttgatttaatctgagt |
2550079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 34 - 174
Target Start/End: Complemental strand, 24762020 - 24761878
Alignment:
| Q |
34 |
aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgc |
132 |
Q |
| |
|
|||||||||||||| |||| || ||||||||| ||||||||||| || | ||||||||||||||||| ||| |||| ||| | | ||||||||| | |
|
|
| T |
24762020 |
aatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaatgctgaccgttggatctc |
24761921 |
T |
|
| Q |
133 |
atcatttggctaaacatgcatctcat-ctttgatctaatttga |
174 |
Q |
| |
|
||||||||||| | |||||||||||| |||||||||||||||| |
|
|
| T |
24761920 |
atcatttggctcagcatgcatctcatcctttgatctaatttga |
24761878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 174
Target Start/End: Original strand, 24815915 - 24816056
Alignment:
| Q |
35 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca |
133 |
Q |
| |
|
||||||||||||| |||| || ||||||||| ||||||||||| || | ||||||||||||||||| ||| |||| | | | || ||||||||| || |
|
|
| T |
24815915 |
atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctggccgttggatctca |
24816014 |
T |
|
| Q |
134 |
tcatttggctaaacatgcatctcat-ctttgatctaatttga |
174 |
Q |
| |
|
|||||||||| | |||||||||||| |||||||||||||||| |
|
|
| T |
24816015 |
tcatttggctcagcatgcatctcatcctttgatctaatttga |
24816056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 53027785 - 53027732
Alignment:
| Q |
122 |
cgttggatcgcatcatttggctaaacatgcatctcat-ctttgatctaatttga |
174 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||||| |||||||||||||||| |
|
|
| T |
53027785 |
cgttggatctcatcatttggctcagcatgcatctcatcctttgatctaatttga |
53027732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 174
Target Start/End: Complemental strand, 53352882 - 53352741
Alignment:
| Q |
35 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgca |
133 |
Q |
| |
|
||||||||||||| |||| || ||||||||| ||||||||||| || | |||||||||| |||||| ||| | |||| | | | ||||||||| || |
|
|
| T |
53352882 |
atcatacttatatctaatccttcttaacattgctaatgactttgcaaactctaaacctaaacggttttggctccaaaacgatgctgaccgttggatctca |
53352783 |
T |
|
| Q |
134 |
tcatttggctaaacatgcatctcat-ctttgatctaatttga |
174 |
Q |
| |
|
|||||||||| | |||||||||| ||||||| |||||||| |
|
|
| T |
53352782 |
tcatttggctcagtgtgcatctcatcctttgatttaatttga |
53352741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 29863482 - 29863312
Alignment:
| Q |
35 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca |
133 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | ||||||||| || | ||||||||||||||||| ||| |||| ||||||||| ||||||||| || |
|
|
| T |
29863482 |
atcatacttatatctaatctttgttaacattgctcatgactttgcaaaccgtaaacctaaatggttttggctccaaaacaagggaggccgttggatctca |
29863383 |
T |
|
| Q |
134 |
tcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactttcaaatttgatgtatatttc |
203 |
Q |
| |
|
|||||||||| | ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29863382 |
tcatttggctgagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttc |
29863312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 12506435 - 12506479
Alignment:
| Q |
34 |
aatcatacttatattcaatctttgttaacattgttaatgactttg |
78 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
12506435 |
aatcatacttatatctaatctttgttaacattgctaatgactttg |
12506479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 50 - 207
Target Start/End: Complemental strand, 33045537 - 33045378
Alignment:
| Q |
50 |
aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaac-aagggaggtcgttggatcgcatcatttggctaaaca |
148 |
Q |
| |
|
||||||||||||||||| ||||||||||| || | ||||||||||||||||| ||| |||| |||||||| ||||||||| |||||||||| ||| || |
|
|
| T |
33045537 |
aatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttggatctcatcatttggttaagca |
33045438 |
T |
|
| Q |
149 |
tgcatctcatc-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
207 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33045437 |
tgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat |
33045378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 35 - 158
Target Start/End: Original strand, 10092512 - 10092636
Alignment:
| Q |
35 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttc-aaacaagggaggtcgttggatcgca |
133 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| || | |||| |||||||||||| ||| | |||||||||||| ||||||||| || |
|
|
| T |
10092512 |
atcatacttatatctaatctttgttaacattgttaatgactttgcaaaccctaaatctaaatggttttggctccaaaacaagggaggccgttggatctca |
10092611 |
T |
|
| Q |
134 |
tcatttggctaaacatgcatctcat |
158 |
Q |
| |
|
|||||||||||| |||||||||||| |
|
|
| T |
10092612 |
tcatttggctaagcatgcatctcat |
10092636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 3065697 - 3065808
Alignment:
| Q |
34 |
aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgca |
133 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | ||||||||||| || | ||||||||||||||||| ||| |||||||||||| ||||||||| || |
|
|
| T |
3065697 |
aatcatacttatatctaatctttgttaacatggctaatgactttgcaaaccctaaacctaaatggttttggctccaaacaagggagaccgttggatctca |
3065796 |
T |
|
| Q |
134 |
tcatttggctaa |
145 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3065797 |
tcatttggctaa |
3065808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 170
Target Start/End: Original strand, 8976419 - 8976541
Alignment:
| Q |
50 |
aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaac-aagggaggtcgttggatcgcatcatttggctaaaca |
148 |
Q |
| |
|
|||||||||||| |||| |||||||||| || | ||||||||||||||||| ||| |||| ||||||| ||||||||| ||| |||| |||||||| |
|
|
| T |
8976419 |
aatctttgttaatattgctaatgactttacaaactctaaacctaaatggttttggctccaaaataagggagaccgttggatctcattatttagctaaaca |
8976518 |
T |
|
| Q |
149 |
tgcatctcat-ctttgatctaat |
170 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
8976519 |
tgcatctcatcctttgatctaat |
8976541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 34 - 113
Target Start/End: Original strand, 16246701 - 16246780
Alignment:
| Q |
34 |
aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaaca |
113 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| ||||||||||| || | ||| ||||||||||||| ||| |||||| |
|
|
| T |
16246701 |
aatcatacttatatctaatctttgtgaacattgctaatgactttgcaaaccctaatcctaaatggttttggctccaaaca |
16246780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 10092641 - 10092677
Alignment:
| Q |
176 |
tcaaactttcaaatttgatgtatatttcctatacacc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10092641 |
tcaaactttcaaatttgatgtatatttcctatgcacc |
10092677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 30908475 - 30908412
Alignment:
| Q |
50 |
aatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaaca |
113 |
Q |
| |
|
||||||||||||||||| ||||||||||| || | |||| |||||||||||| ||| |||||| |
|
|
| T |
30908475 |
aatctttgttaacattgctaatgactttgcaaaccctaaatctaaatggttttggctccaaaca |
30908412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 4660295 - 4660253
Alignment:
| Q |
36 |
tcatacttatattcaatctttgttaacattgttaatgactttg |
78 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
4660295 |
tcatacttatatataatctttgttaacattgctaatgactttg |
4660253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 35 - 207
Target Start/End: Complemental strand, 11755 - 11581
Alignment:
| Q |
35 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgca |
133 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||| || | ||||||||| ||||||| || |||| ||||||||| ||||||||| || |
|
|
| T |
11755 |
atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaactggttttgactccaaaacaagggaggccgttggatctca |
11656 |
T |
|
| Q |
134 |
tcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
207 |
Q |
| |
|
|||||||| ||| ||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11655 |
tcatttggttaagcatgcatctcatcctttgatttaatctgagtcaaactttcaaatttgatgtatatttcctat |
11581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 35 - 207
Target Start/End: Original strand, 654 - 828
Alignment:
| Q |
35 |
atcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaac-aagggaggtcgttggatcgca |
133 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||| ||| || | ||||||||||||||||| || |||| |||||||| ||||||||| || |
|
|
| T |
654 |
atcatacttatatctgatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttgactccaaaataagggaggccgttggatctca |
753 |
T |
|
| Q |
134 |
tcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
207 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
754 |
tcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctat |
828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 34 - 186
Target Start/End: Original strand, 27409 - 27563
Alignment:
| Q |
34 |
aatcatacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgca |
133 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| |||| || | ||||||||||||||||| ||| ||||||||||||| ||||||||| || |
|
|
| T |
27409 |
aatcatacttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctca |
27508 |
T |
|
| Q |
134 |
tcatttggctaaacatgcatctcat-ctttgatctaatttga-gtcaaactttca |
186 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
27509 |
tcatttggctaagcatgcatctcatcctttgatctaatttgacttcaaactttca |
27563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 14042 - 13998
Alignment:
| Q |
34 |
aatcatacttatattcaatctttgttaacattgttaatgactttg |
78 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
14042 |
aatcatacttatatctaatctttgttaacattgctaatgactttg |
13998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 50990911 - 50990985
Alignment:
| Q |
39 |
tacttatattcaatctttgttaacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaaca |
113 |
Q |
| |
|
||||||||| ||||||||||||||||| | || |||||| || | ||||||||||||||||| ||| |||||| |
|
|
| T |
50990911 |
tacttatatctaatctttgttaacattgctgataactttgcaaaccctaaacctaaatggttttggctccaaaca |
50990985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2938 times since January 2019
Visitors: 3831