View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_high_18 (Length: 455)
Name: NF0611_high_18
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_high_18 |
 | |
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| [»] scaffold0170 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 110 - 428
Target Start/End: Complemental strand, 10802516 - 10802194
Alignment:
| Q |
110 |
ctgctttctatgttggaagcccagcccaatagccatattctttacttnnnnnnnnnnnga------ggcaaaattgaggcaaatgttcaggcgtgtaaaa |
203 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||| |
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| T |
10802516 |
ctgctttctatgttggaagcccagcccaatagccatattctttacttaaaaaaaaataaaaaaatgggcaaaattgaggcaaatgttcag-cgtgtaaaa |
10802418 |
T |
|
| Q |
204 |
atgttctatttttcagtcttctccttctctaacttatcgtgactctcccactctcagtgactcaatctctgtttcaatttcatatcatttgcttctccct |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || || ||||||||||||||||||||||| |
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|
| T |
10802417 |
atgttctatttttcagtcttctccttctctaacttatcgtgactctccctctcttagtgactcaatctcaatt-cagtttcatatcatttgcttctccct |
10802319 |
T |
|
| Q |
304 |
ctcttaatttgcgcctcttcctctctcaactcttagtctccattgtcattccttctcctcttcacttcctccaagtttgttccatgttttttctttgtta |
403 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10802318 |
ctctcaatttgcgcctcttcctctctcaactcttagtctccattttcattccttctcctcttcacttcctccaggtttgttccatgttttttctttgtta |
10802219 |
T |
|
| Q |
404 |
tttgttctatacttctattttgttc |
428 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
10802218 |
tttgttctatacttctattttgttc |
10802194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 170 - 429
Target Start/End: Complemental strand, 13570028 - 13569767
Alignment:
| Q |
170 |
ggcaaaattgaggcaaatgttcaggcgtgtaaaaatgttctatttttcagtcttctccttctctaacttatcgtgactctcccactctcagtgactcaat |
269 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
13570028 |
ggcaaaattgaggcaaatgttcaggcgtgtaaaaatgttctatttttcagtcttctccttctctaacttatcgtgactctccctctcttagtgactcaat |
13569929 |
T |
|
| Q |
270 |
ctctgtttcaatttcatatcattt--gcttctccctctcttaatttgcgcctcttcctctctcaactcttagtctccattgtcattccttctcctcttca |
367 |
Q |
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|||| ||||||||||||||||||| || ||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
13569928 |
ctctatttcaatttcatatcatttgcgcctcttcctctctcaatttgcgcctcttcctctctcaactcttagtctccattttcattccctctcctcttca |
13569829 |
T |
|
| Q |
368 |
cttcctccaagtttgttccatgttttttctttgttatttgttctatacttctattttgttct |
429 |
Q |
| |
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||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13569828 |
ctttctccaggtttgttccatgttttttctttgttatttgttctatacttctattttgttct |
13569767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 413
Target Start/End: Complemental strand, 44586626 - 44586495
Alignment:
| Q |
288 |
tcatttgcttctccctctcttaatttgcgcctcttcctctctcaactcttagt----ctccattgtcattccttctcctcttcact-tcctccaagtttg |
382 |
Q |
| |
|
|||||||| ||||||||||| | || ||||||| ||||||| |||||| ||| |||||| ||||| |||||||||| |||| ||||||||||||| |
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|
| T |
44586626 |
tcatttgcctctccctctctcagcttacgcctctccctctcttaactctgagtatgcatccattttcatttcttctcctctccactctcctccaagtttg |
44586527 |
T |
|
| Q |
383 |
ttccatgtt-ttttctttgttatttgttctat |
413 |
Q |
| |
|
||| ||||| |||||||||||||||||||||| |
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| T |
44586526 |
ttctatgttattttctttgttatttgttctat |
44586495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 361
Target Start/End: Complemental strand, 11844068 - 11843991
Alignment:
| Q |
288 |
tcatttgcttctccctctcttaatttgcgcctcttcctctctcaactcttagt----ctccattgtcattccttctcc |
361 |
Q |
| |
|
|||||||| ||||||| ||| || ||||||||| |||||||||||||| ||| ||||||| ||||||||||||| |
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| T |
11844068 |
tcatttgcctctccctatctcaacttgcgcctcaccctctctcaactctcagtctgcctccattttcattccttctcc |
11843991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0170 (Bit Score: 163; Significance: 7e-87; HSPs: 1)
Name: scaffold0170
Description:
Target: scaffold0170; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 170 - 413
Target Start/End: Original strand, 7731 - 7971
Alignment:
| Q |
170 |
ggcaaaattgaggcaaatgttcaggcgtg--taaaaatgttctatttttcagtcttctccttctctaacttatcgtgactctcccactctcagtgactca |
267 |
Q |
| |
|
|||| |||||||||||||||||||||| | || |||| ||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
7731 |
ggcagaattgaggcaaatgttcaggcgcgcatacaaattttctatttttcggtcttctccttctctaacttaacgtgactctccctctctcagtgactca |
7830 |
T |
|
| Q |
268 |
atctctgtttcaatttcatatcatttgcttctccctctcttaatttgcgcctcttcctctctcaactcttagtctccattgtcattccttctcctcttca |
367 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| |
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| T |
7831 |
atctctgtttcagtt-----tcatttgcttctccctctcttaatttgcgcctcttcctctctcaactctcagtctccattttcattcctcctcctcttca |
7925 |
T |
|
| Q |
368 |
cttcctccaagtttgttccatgttttttctttgttatttgttctat |
413 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
7926 |
cttcctccaggtttgttccatgttttttctttgttattttttctat |
7971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 92 - 359
Target Start/End: Complemental strand, 25131720 - 25131449
Alignment:
| Q |
92 |
agtgcccatgctctgcttctgctttctatgttggaagcccagcccaatagccatattctttacttnnnnnnnnnnnga---ggcaaaattgaggcaaatg |
188 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
25131720 |
agtgcccaggctctgcttctgctttcaatgttggaagcccaacccaatagccatattctttacttaaaaaaaaaaaaaccgggcaaaattgaggcaaatg |
25131621 |
T |
|
| Q |
189 |
ttcaggcgtgtaaaaatgttctatttttcagtcttctccttctctaacttatcgtgactctcccactctcagtgactcaatctctgtttcaatttcatat |
288 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |
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|
| T |
25131620 |
ttcaggcgtgtaaaaatgt-ctatttttcagtcttctccttctctaacttatagtgactctccctctctcagtgactcaatctctgtttcagtttcatat |
25131522 |
T |
|
| Q |
289 |
cattt--gcttctccctctcttaatttgcgcctcttcctctctcaactcttagtctccattgtcattccttct |
359 |
Q |
| |
|
||||| || ||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
25131521 |
catttgcgcctcttcctctctcaatttgcgcctcttcctctctcaactcttagtctccattttcattccttct |
25131449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 352 - 428
Target Start/End: Complemental strand, 25131110 - 25131034
Alignment:
| Q |
352 |
ttccttctcctcttcacttcctccaagtttgttccatgttttttctttgttatttgttctatacttctattttgttc |
428 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
25131110 |
ttccttctcctcttcacttcccccaggtttgttccatgttttttctttgttatttgttctatacttcaattttgttc |
25131034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 320 - 428
Target Start/End: Original strand, 141538 - 141646
Alignment:
| Q |
320 |
cttcctctctcaactcttagtctccattgtcattccttctcctcttcacttcctccaagtttgttccatgttttttctttgttatttgttctatacttct |
419 |
Q |
| |
|
|||||||| ||||||||| ||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
141538 |
cttcctctgtcaactcttcgtctccattttcattccttctcctcttcacttcctcgaggtttgttccatgttttttctttgttaattgttctatacttct |
141637 |
T |
|
| Q |
420 |
attttgttc |
428 |
Q |
| |
|
||||||||| |
|
|
| T |
141638 |
attttgttc |
141646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 365
Target Start/End: Original strand, 53707339 - 53707393
Alignment:
| Q |
314 |
gcgcctcttcctctctcaactcttagtctc---cattgtcattccttctcctctt |
365 |
Q |
| |
|
|||||||| |||||||||||||| |||||| |||| ||||||||||||||||| |
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|
| T |
53707339 |
gcgcctctccctctctcaactctcagtctcggtcattttcattccttctcctctt |
53707393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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