View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_high_19 (Length: 455)
Name: NF0611_high_19
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 12 - 426
Target Start/End: Original strand, 1499359 - 1499772
Alignment:
| Q |
12 |
acagagttcgaccaattgttatttcgtgttattttgagcacgaaatgctaaccttatcaaatgatacgactattgatcatagagttcggccaattgtgcc |
111 |
Q |
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| T |
1499359 |
acagagttcgaccaattgttatttcgtgttattttgagcacgaaatgctaaccttatcaaatgatacgactattgatcatagagttcggcca-ttgtgcc |
1499457 |
T |
|
| Q |
112 |
tatatatctcacagcagagtgactgttatacttttctagtatgtagtgatttatggttacaaagtacaaaactttcttgaaatactacgatccagtttac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1499458 |
tatatatctcacagcagagtgactgttatacttttctagtatgtagtgatttatggttacaaagtacaaaactttcttgaaatactacgatccagtttac |
1499557 |
T |
|
| Q |
212 |
aactgaaccgttccacagggtttcaatctgcacccctaaccctccaaattgatacccaactaaggaacgaactcattattagcgaatatcaaccataatc |
311 |
Q |
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| T |
1499558 |
aactgaaccgttccacagggtttcaatctgcacccctaaccctccaaattgatacccaactaaggaacggactcattattagcgaatatcaaccataatc |
1499657 |
T |
|
| Q |
312 |
aacagggtggcagctaaataattcattcattgataaccttaatccgacaactatatggttacaaagatagaattttgtgcatgaatgaaatcaacctcat |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1499658 |
aacagggtggcagctaaataattcattcattgataaccttaatccgacaactatacggttacaaagatagaattttgtgcatgaatgaaatcaacctcat |
1499757 |
T |
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| Q |
412 |
gtgcatgtttggttt |
426 |
Q |
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| T |
1499758 |
gtgtatgtttggttt |
1499772 |
T |
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