View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_high_21 (Length: 454)
Name: NF0611_high_21
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 45 - 288
Target Start/End: Original strand, 34233977 - 34234214
Alignment:
| Q |
45 |
gaaatatgaatttagttgatacctaatatctcaagagatggtgagttgttatctgatgccattagagaagatgctgagctannnnnnnnnnnnnnnnnnn |
144 |
Q |
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| T |
34233977 |
gaaatatgaatttagttgatacctaatatctcaagagatggtgagttgttatctgatgccattagagaagatgctgagctattcttcttcttct------ |
34234070 |
T |
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| Q |
145 |
cacgacaaccttcgacttcgattcatacgattactaccatgtttcggnnnnnnnnacggtatgatccgaactactgacatgacccgaaagcccaaatgca |
244 |
Q |
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| T |
34234071 |
cacgacaaccttcgacttcgattcattcgattactaccatgtttcggttttttttacggtatgatccgaactactgacatgacccgaaagcccaaatgca |
34234170 |
T |
|
| Q |
245 |
agttctcattgagactcacccaaacaactcaactcaatttacac |
288 |
Q |
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| T |
34234171 |
agttctcattgagactcacccaaacaactcaactcaatttacac |
34234214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 376 - 439
Target Start/End: Original strand, 34234315 - 34234378
Alignment:
| Q |
376 |
cttcaggtaatttaatggggtctcagaggttcgaaccactgtctctgtataaattatgcaatgt |
439 |
Q |
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| T |
34234315 |
cttcaggtaatttaatagggtctcaggggttcgaatcactgtccttgtataaattatgcaatgt |
34234378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 441
Target Start/End: Original strand, 55383883 - 55383933
Alignment:
| Q |
391 |
tggggtctcagaggttcgaaccactgtctctgtataaattatgcaatgttc |
441 |
Q |
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| T |
55383883 |
tggggtgtcaggggttcgaacccctgcctctgcataaattatgcaatgttc |
55383933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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