View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0611_high_24 (Length: 439)
Name: NF0611_high_24
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_high_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 111 - 303
Target Start/End: Original strand, 11782895 - 11783074
Alignment:
| Q |
111 |
cataatatatcaatatttgtccctttgctgccgttttttaagtttaaaaacaatcacaacgaaacttccaatataaattttaattatttttagttagact |
210 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11782895 |
cataatatattaatatttgtccctttgctgccgttttttaagtttaa-------------gaaacttccaatataaattttaattatttttagttagact |
11782981 |
T |
|
| Q |
211 |
ttttacacaattcttagatcatttgcttggggatgaagttaatgaatagttacatgtattaaagnnnnnnntgcaaacctcatgcttcccatg |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11782982 |
ttttacacaattcttagatcatttgcttggggatgaagttaatgaatagttacatgtattaaagaaaaaaatgcaaacctcatgcttcccatg |
11783074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 153 - 274
Target Start/End: Original strand, 11777080 - 11777201
Alignment:
| Q |
153 |
tttaaaaacaatcacaacgaaacttccaatataaattttaattatttttagttagactttttacacaattcttagatcatttgcttggggatgaagttaa |
252 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
11777080 |
tttaaaaacaatcacaacagaatttccaatataaattttaattattcttagttagactttttacacaattcttagatcatttgcttgggggtgaagataa |
11777179 |
T |
|
| Q |
253 |
tgaatagttacatgtattaaag |
274 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
11777180 |
tggatagttacatgtattaaag |
11777201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 352 - 429
Target Start/End: Original strand, 11783155 - 11783232
Alignment:
| Q |
352 |
atccaaagagtattctgagaaattaacttagatggcaagcgaaaaattcaattttggtttcctaattttcttcctatg |
429 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11783155 |
atccgaagagtattctgagaaattaacttagatggcaagcgaaaaattcaattttggtttcctaattttcttcctatg |
11783232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 352 - 429
Target Start/End: Original strand, 11777279 - 11777356
Alignment:
| Q |
352 |
atccaaagagtattctgagaaattaacttagatggcaagcgaaaaattcaattttggtttcctaattttcttcctatg |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
11777279 |
atccaaagagtattctgagaaattaacttagatggcaagcaaaaaaatcaatttttgtttcgtaattttcttcctatg |
11777356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 424
Target Start/End: Original strand, 11769899 - 11769962
Alignment:
| Q |
361 |
gtattctgagaaattaacttagatggcaagcgaaaaattcaattttggtttcctaattttcttc |
424 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| | ||||||| |||| ||||||||||||||||| |
|
|
| T |
11769899 |
gtattctgagaaatcaacatagatggcaagcaataaattcagtttttgtttcctaattttcttc |
11769962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2311 times since January 2019
Visitors: 3818