View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_high_29 (Length: 408)
Name: NF0611_high_29
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 8 - 378
Target Start/End: Original strand, 10106580 - 10106951
Alignment:
| Q |
8 |
cagcagagatcacaatgactttgacatattgaaacaagtaataatttgaggaaatgaataaattgaacaccggacacgcgtgggatcggaagtgtcggcg |
107 |
Q |
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| T |
10106580 |
cagcagacatcacaatgactttgacatattgaaacaagtaataatttgaggaaatgaataaattgaacaccggacacgcgtgggatcggaagagtcggtg |
10106679 |
T |
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| Q |
108 |
ttaagatgac-tttcaaaattaacaaaagcattaaataattaacgtttgatcaaccataaccaaaaggcttgcatgtttagcaaatgtatatatcgagtg |
206 |
Q |
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| T |
10106680 |
ttaagatgacgtttcaaaattaacaaaagcattaaataattaacatttgatcaaccataaccaaaaggcttgcatgtttagcaaatgtatatatcgagtg |
10106779 |
T |
|
| Q |
207 |
tccacttgaacatgcattgaactggacataaatccatgtaatccattcagggatggggggaaagcaggctgataatatagttgcagtgatgactatgacc |
306 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10106780 |
tccacttgaacatgcattgaacaggacgtaaatccatgtaatccattcagggatggggggaaagcaggctgataatatagtcgcagtgatgactatgacc |
10106879 |
T |
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| Q |
307 |
gtgtcatcagatccctagcaaaagtgaaacaaggaaggagttccaaatatattacctgtacaacaagagtaa |
378 |
Q |
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| T |
10106880 |
atgtcatcagatccctagcaaaagtgaaacaaggaaggagttccaaatatattacctgtacaacaagagtaa |
10106951 |
T |
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