View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0611_high_4 (Length: 726)

Name: NF0611_high_4
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0611_high_4
NF0611_high_4
[»] chr6 (1 HSPs)
chr6 (29-709)||(7757022-7757704)


Alignment Details
Target: chr6 (Bit Score: 615; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 29 - 709
Target Start/End: Complemental strand, 7757704 - 7757022
Alignment:
Q  29 atacacatatggtgtattaatacatgggttatgtatgaatggtagcatgaaagaagcatctaaactctttaaatcattggatgaattacacttggaacct 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||    
T  7757704 atacacatatggtgtattaatacatgggttatgtatgaatggtagcatgaaagaagcatctaaactctttaaatcattggatgagttaaacatggaacct 7757605  T
Q  129 aatagtgtcatatatgatacaatgattcatggttattgcaaagaaggaagctgttatagggctcttaggttactcaatgaaatgattggtaaaggaatgg 228  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7757604 aatagtgtcatatatgatacattgattcatggttattgcaaagaaggaaactgttatagggctcttaggttactcaatgaaatgattggtaaaggaatgg 7757505  T
Q  229 ttccaaatgtggcaagtttttgttcaaccataggacttctttgcaaggatgaaaaattgaaggaagctgaggttgttttgcaacatatggtaaatttggg 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7757504 ttccaaatgtggcaagtttttgttcaaccataggacttctttgcaaggatgaaaaattgaaggaagctgaggttgttttgcaacatatggtaaatttggg 7757405  T
Q  329 attaaagccatctgtatcaatgtacaatatggttcacaaagataaaagtgaagttttggatgttgatcttgaaagtgtaatataatttgtaattcataat 428  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7757404 attaaagccatctgtatcattgtacaatatggttcacaaagataaaagtgaagttttggatgttgatcttgaaagtgtaatataatttgtaattcataat 7757305  T
Q  429 tttactctgtttgattctattttatttgtcaatcaccatgatatgaagaaaatgtatataatcctagttgcaaaatttagtttttctattcaagaccata 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7757304 tttactctgtttgattctattttatttgtcaatcaccatgatatgaagaaaatgtatataatcctagttgcaaaatttagtttttctattcaagaccata 7757205  T
Q  529 atatttaaataattccacttatttttatttcctttttcccaaacatatcccataatattcacatcctagtaattctgtctgcccaagtaatgtcacaact 628  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7757204 atatttaaataattccacttatttttatttccttttccccaaacatatcccataatagtcacatcctagtaattctgtctgcccaagtaatgtcacaact 7757105  T
Q  629 catatgttgaaacgtttcttaaatagttttatattagaa--nnnnnnnagaaccggaaacttctaaaaacatgtaaatacctt 709  Q
    |||||||||||||||||||||||||||||||||||||||         |||||| ||||||||||||||||||||||||||||    
T  7757104 catatgttgaaacgtttcttaaatagttttatattagaatgtttttttagaacctgaaacttctaaaaacatgtaaatacctt 7757022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2246 times since January 2019
Visitors: 3815