View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_high_43 (Length: 307)
Name: NF0611_high_43
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_high_43 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 24 - 278
Target Start/End: Original strand, 47197791 - 47198045
Alignment:
| Q |
24 |
agaagcaaaggtggatatgggtggagattatcattggctggagcaatcattccagcagttatgcttacaatggggtctctcatagtggatgatactccca |
123 |
Q |
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| T |
47197791 |
agaatcaaaggtggatatgggtggagagtatcattggctggagcaatcattccagcagttatgcttacaatggggtctctcatagtggatgatactccca |
47197890 |
T |
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| Q |
124 |
acagtctcattgaaaggggtttcgaggagaaagggaaagccgttctaagaaagattcgtggtgttgaaaatattgagcccgagtttgaagacatactcag |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47197891 |
acagtctcattgaaaggggtttcgaggagaaagggaaagccgttcttacaaagattcgtggtgttgaaaatattgagcccgagtttgaagacatactcag |
47197990 |
T |
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| Q |
224 |
agctagtaaagtggctaatgaggttaagagtcccttcaaggatctcgttaagtcc |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47197991 |
agctagtaaagtggctaatgaggttaagagtcccttcaaggatctcgttaagtcc |
47198045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 31 - 278
Target Start/End: Original strand, 47184916 - 47185163
Alignment:
| Q |
31 |
aaggtggatatgggtggagattatcattggctggagcaatcattccagcagttatgcttacaatggggtctctcatagtggatgatactcccaacagtct |
130 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47184916 |
aaggtggatatgggtggagaatatcattggccggagcaatcattccagcagttatgcttacagtggggtctctcatagtggatgatactcccaacagtct |
47185015 |
T |
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| Q |
131 |
cattgaaaggggtttcgaggagaaagggaaagccgttctaagaaagattcgtggtgttgaaaatattgagcccgagtttgaagacatactcagagctagt |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47185016 |
cattgaaaggggtttcgaggagaaagggaaagccgttctaagaaagattcgtggtgttgaaaatattgagcccgagtttgaagacatactcagagctagt |
47185115 |
T |
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| Q |
231 |
aaagtggctaatgaggttaagagtcccttcaaggatctcgttaagtcc |
278 |
Q |
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||||||||||||||||| ||||| |||||||||||||| ||||||||| |
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| T |
47185116 |
aaagtggctaatgaggtcaagagccccttcaaggatcttgttaagtcc |
47185163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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