View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_high_47 (Length: 267)
Name: NF0611_high_47
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_high_47 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 267
Target Start/End: Original strand, 732095 - 732349
Alignment:
| Q |
13 |
aatataagtgggtttatactataaggagagagggagtagtagttacttagttaatgttttgtgggtttgcccnnnnnnnnnnnnnnnnnnnnnnnngtta |
112 |
Q |
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| T |
732095 |
aatataagtgggcttatactataaggagagagggagtagtagttacttagttaatgttttgtgggtttgcacaaaaataaaaaatagtagtaaaaagtta |
732194 |
T |
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| Q |
113 |
atgttttgtggggtcaaggtgatagagccgaatattttgtacttgccaagtcattcgcggaatatttttctctcgcaccaaatcgcattttcctttaaaa |
212 |
Q |
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| T |
732195 |
atgttttgtggggtcaaggtgatagagccgaatattttgaacttgccaagtcattcacggaatatttttctctcgcaccaaatcgcattttcctttaaaa |
732294 |
T |
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| Q |
213 |
ccctatcccatatatgaacgatagaacaatagcgtcttcgttttgtttgtacgat |
267 |
Q |
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| T |
732295 |
ccctatcccatatacgaacgatagaacaatagcgtcttcgttttgtttgtacgat |
732349 |
T |
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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 8393068 - 8392957
Alignment:
| Q |
109 |
gttaatgttttgtggggtcaaggtgatagagccgaatattttgtacttgccaagtcattcgcggaat--------atttttctctcgcaccaaatcgcat |
200 |
Q |
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| T |
8393068 |
gttaatgttttgtgggatcaaggtgatagagccgaatattttgaacttgtcaagtcattcgctcaattccgacgaatttttctctcgcaccaaaaagcat |
8392969 |
T |
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| Q |
201 |
tttcctttaaaa |
212 |
Q |
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| T |
8392968 |
tttcctttaaaa |
8392957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 15578324 - 15578385
Alignment:
| Q |
109 |
gttaatgttttgtggggtcaaggtgatagagccgaatattttgtacttgccaagtcattcgc |
170 |
Q |
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| T |
15578324 |
gttaatgttttgtggggtcaaggtgatagagccgaatattttgaacttgctaagtcattcgc |
15578385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 36846615 - 36846554
Alignment:
| Q |
109 |
gttaatgttttgtggggtcaaggtgatagagccgaatattttgtacttgccaagtcattcgc |
170 |
Q |
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| T |
36846615 |
gttaatgttttgtgggatcaaggtgatagagccgaatattttgaacttgccaagtcattcgc |
36846554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 109 - 208
Target Start/End: Original strand, 44462826 - 44462933
Alignment:
| Q |
109 |
gttaatgttttgtggggtcaaggtgatagagccgaatattttgtacttgccaagtcattcgcggaat--------atttttctctcgcaccaaatcgcat |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||| ||| ||||||||||||||||||| |||| |
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| T |
44462826 |
gttaatgttttgtgggatcaaggtgatagagccgaatattttgaacttgccaaatcattcgctcaattccgacgaatttttctctcgcaccaaaaagcat |
44462925 |
T |
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| Q |
201 |
tttccttt |
208 |
Q |
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|||||||| |
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| T |
44462926 |
tttccttt |
44462933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 15578222 - 15578261
Alignment:
| Q |
13 |
aatataagtgggtttatactataaggagagagggagtagt |
52 |
Q |
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| T |
15578222 |
aatataagggggcttatactataaggagagagggagtagt |
15578261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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