View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0611_high_5 (Length: 596)
Name: NF0611_high_5
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 29 - 582
Target Start/End: Complemental strand, 7757704 - 7757151
Alignment:
| Q |
29 |
atacacatatggtgtattaatacatgggttatgtatgaatggtagcatgaaagaagcatctaaactctttaaatcattggatgaattacacttggaacct |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||| |
|
|
| T |
7757704 |
atacacatatggtgtattaatacatgggttatgtatgaatggtagcatgaaagaagcatctaaactctttaaatcattggatgagttaaacatggaacct |
7757605 |
T |
|
| Q |
129 |
aatagtgtcatatatgatacaatgattcatggttattgcaaagaaggaagctgttatagggctcttaggttactcaatgaaatgattggtaaaggaatgg |
228 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7757604 |
aatagtgtcatatatgatacattgattcatggttattgcaaagaaggaaactgttatagggctcttaggttactcaatgaaatgattggtaaaggaatgg |
7757505 |
T |
|
| Q |
229 |
ttccaaatgtggcaagtttttgttcaaccataggacttctttgcaaggatgaaaaattgaaggaagctgaggttgttttgcaacatatggtaaatttggg |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7757504 |
ttccaaatgtggcaagtttttgttcaaccataggacttctttgcaaggatgaaaaattgaaggaagctgaggttgttttgcaacatatggtaaatttggg |
7757405 |
T |
|
| Q |
329 |
attaaagccatctgtatcaatgtacaatatggttcacaaagataaaagtgaagttttggatgttgatcttgaaagtgtaatataatttgtaattcataat |
428 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7757404 |
attaaagccatctgtatcattgtacaatatggttcacaaagataaaagtgaagttttggatgttgatcttgaaagtgtaatataatttgtaattcataat |
7757305 |
T |
|
| Q |
429 |
tttactctgtttgattctattttatttgtcaatcaccatgatatgaagaaaatgtatataatcctagttgcaaaatttagtttttctattcaagaccata |
528 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7757304 |
tttactctgtttgattctattttatttgtcaatcaccatgatatgaagaaaatgtatataatcctagttgcaaaatttagtttttctattcaagaccata |
7757205 |
T |
|
| Q |
529 |
atatttaaataattccacttatttttatttcctttttcccaaacatatcccata |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7757204 |
atatttaaataattccacttatttttatttccttttccccaaacatatcccata |
7757151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2064 times since January 2019
Visitors: 3811