View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0611_high_50 (Length: 258)
Name: NF0611_high_50
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_high_50 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 1071133 - 1071350
Alignment:
| Q |
12 |
aaggaaagtcaatttagcatatataaacgcacaaacatacaatgtgtgtctgcatcaaattcaataaatgcaaaatggccaatattcttcctatgatatt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
1071133 |
aaggaaagtcaatttagcatatataaacgcacaaacatacaatgtgtgtctgcatcaaattcattcaatgcaaaatggccaatattcttcctatgatatt |
1071232 |
T |
|
| Q |
112 |
gtttgttattcttaatctcttgttgttcttctttcaattatctacctcaattgataccatcacccaatttcaatctcttaatgatggcaacactttggtt |
211 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1071233 |
gtttgttattcttaatctcatattgttcttctttcaattatctacctcaattgataccatcacccaatttcaatctcttaatgatggcaacactttggtt |
1071332 |
T |
|
| Q |
212 |
tctaatgatggaaccttt |
229 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1071333 |
tctaatgatggaaccttt |
1071350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 1086797 - 1087014
Alignment:
| Q |
12 |
aaggaaagtcaatttagcatatataaacgcacaaacatacaatgtgtgtctgcatcaaattcaataaatgcaaaatggccaatattcttcctatgatatt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
1086797 |
aaggaaagtcaatttagcatatataaacgcacaaacataaaatgtgtgtctgcctcaaactcaatcaatgcaaaatgaccaatattcttcctatgatatt |
1086896 |
T |
|
| Q |
112 |
gtttgttattcttaatctcttgttgttcttctttcaattatctacctcaattgataccatcacccaatttcaatctcttaatgatggcaacactttggtt |
211 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1086897 |
gtttgttattcttagtctcctgttgttcttctttcaattatctacttcaattgataccatcacccaatttcaatctcttcatgatggcaacactttggtt |
1086996 |
T |
|
| Q |
212 |
tctaatgatggaaccttt |
229 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1086997 |
tctaatgatggaaccttt |
1087014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 1046330 - 1046537
Alignment:
| Q |
19 |
gtcaatttagcatatataaacgcacaaacatacaatgtgtgtctgcatcaaattcaataaatgcaaaatggccaatattcttcctatgatattgtttgtt |
118 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| ||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
1046330 |
gtcaatttagcatatctaaacacacaaacatccaacgtgtgtctgcatcaaattcaatcaatgcaaaatgaccaatattctttctatgatattgtttgtt |
1046429 |
T |
|
| Q |
119 |
attcttaatctcttgttgttcttctttcaattatctacctcaattgataccatcacccaatttcaatctcttaatgatggcaacactttggtttctaatg |
218 |
Q |
| |
|
|||||||||||| |||||||| ||| ||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
1046430 |
attcttaatctc---ttgttcttttttaaattatctaccgcaattgatacaatcacccaatttcaatctcttgatgatggcaacaccttggtttctaatg |
1046526 |
T |
|
| Q |
219 |
atggaaccttt |
229 |
Q |
| |
|
| ||||||||| |
|
|
| T |
1046527 |
acggaaccttt |
1046537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 62 - 229
Target Start/End: Original strand, 1103397 - 1103567
Alignment:
| Q |
62 |
tgcatcaaattcaataaatgcaaaatggccaatattcttcctatgatattgtttgttattctt---aatctcttgttgttcttctttcaattatctacct |
158 |
Q |
| |
|
||||||||||||||| | | ||||||| |||||| |||||||| ||| || || | ||| || ||| | ||||| ||||||| ||||||||| ||| |
|
|
| T |
1103397 |
tgcatcaaattcaatcattccaaaatgaccaatacccttcctatcataatgcttttaattatttccaatttattgttcttcttctctcaattatcaaccg |
1103496 |
T |
|
| Q |
159 |
caattgataccatcacccaatttcaatctcttaatgatggcaacactttggtttctaatgatggaaccttt |
229 |
Q |
| |
|
|||||||||| || |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1103497 |
caattgatacaataacccaattccaatctcttgatgatggtaacactttggtttctaatgatggaaccttt |
1103567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2941 times since January 2019
Visitors: 3831