View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0611_high_54 (Length: 251)

Name: NF0611_high_54
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0611_high_54
NF0611_high_54
[»] chr4 (12 HSPs)
chr4 (8-239)||(34234459-34234688)
chr4 (8-251)||(55527275-55527517)
chr4 (9-251)||(24973509-24973750)
chr4 (133-251)||(45245085-45245203)
chr4 (39-192)||(50007333-50007486)
chr4 (190-251)||(18486722-18486783)
chr4 (39-192)||(50335099-50335252)
chr4 (190-251)||(41420271-41420332)
chr4 (190-251)||(156448-156509)
chr4 (190-251)||(1939003-1939064)
chr4 (127-180)||(41784362-41784415)
chr4 (190-251)||(41785205-41785266)
[»] chr3 (15 HSPs)
chr3 (15-251)||(39646234-39646469)
chr3 (8-251)||(35068659-35068901)
chr3 (8-251)||(34084556-34084793)
chr3 (109-251)||(19871621-19871763)
chr3 (9-79)||(19871550-19871620)
chr3 (39-192)||(30930404-30930557)
chr3 (39-192)||(14439627-14439779)
chr3 (199-251)||(7666145-7666197)
chr3 (39-170)||(20514680-20514810)
chr3 (8-62)||(30530697-30530751)
chr3 (39-170)||(54336115-54336245)
chr3 (16-170)||(27933682-27933829)
chr3 (190-251)||(54336403-54336464)
chr3 (198-251)||(53771936-53771989)
chr3 (102-180)||(30530785-30530862)
[»] chr5 (13 HSPs)
chr5 (8-251)||(759624-759866)
chr5 (8-251)||(5506065-5506308)
chr5 (8-251)||(28704351-28704592)
chr5 (8-251)||(28678358-28678598)
chr5 (8-215)||(30490220-30490427)
chr5 (116-251)||(34016425-34016560)
chr5 (17-180)||(26506600-26506760)
chr5 (15-170)||(17343783-17343936)
chr5 (39-170)||(20884320-20884450)
chr5 (190-251)||(38740219-38740280)
chr5 (190-251)||(35049127-35049188)
chr5 (198-251)||(20883322-20883375)
chr5 (190-251)||(26505903-26505964)
[»] chr1 (14 HSPs)
chr1 (8-251)||(33401861-33402103)
chr1 (9-251)||(33618287-33618529)
chr1 (9-251)||(28475217-28475458)
chr1 (8-251)||(48026492-48026734)
chr1 (87-251)||(35563949-35564102)
chr1 (15-168)||(7318857-7319007)
chr1 (39-192)||(12066928-12067081)
chr1 (59-177)||(30704112-30704229)
chr1 (190-251)||(1181148-1181209)
chr1 (190-251)||(12067650-12067711)
chr1 (190-251)||(30703405-30703466)
chr1 (190-251)||(23943295-23943356)
chr1 (127-192)||(23942632-23942698)
chr1 (190-223)||(25818809-25818842)
[»] chr8 (8 HSPs)
chr8 (8-249)||(5966646-5966886)
chr8 (8-251)||(34278955-34279197)
chr8 (41-192)||(5016468-5016619)
chr8 (101-180)||(15893493-15893571)
chr8 (190-251)||(5075903-5075964)
chr8 (127-180)||(30944382-30944435)
chr8 (190-251)||(41601259-41601320)
chr8 (190-251)||(5015788-5015849)
[»] chr7 (10 HSPs)
chr7 (8-244)||(38386655-38386890)
chr7 (8-233)||(38048125-38048349)
chr7 (8-251)||(19363551-19363793)
chr7 (8-249)||(4543-4783)
chr7 (39-192)||(44225335-44225488)
chr7 (190-251)||(23943354-23943415)
chr7 (190-251)||(44226109-44226170)
chr7 (50-170)||(2368802-2368921)
chr7 (127-180)||(24503484-24503537)
chr7 (16-57)||(26151807-26151847)
[»] chr6 (6 HSPs)
chr6 (8-251)||(4319558-4319800)
chr6 (8-251)||(32274933-32275176)
chr6 (9-251)||(12704291-12704532)
chr6 (8-251)||(31484111-31484354)
chr6 (39-192)||(1030592-1030745)
chr6 (190-251)||(1031372-1031433)
[»] chr2 (11 HSPs)
chr2 (8-251)||(8273709-8273951)
chr2 (8-192)||(26225153-26225341)
chr2 (15-192)||(35003716-35003891)
chr2 (42-170)||(9827724-9827851)
chr2 (190-251)||(26224486-26224547)
chr2 (39-170)||(22728878-22729008)
chr2 (200-251)||(19379868-19379919)
chr2 (190-251)||(22728218-22728279)
chr2 (190-251)||(35004479-35004540)
chr2 (15-180)||(14330021-14330179)
chr2 (145-185)||(28758458-28758498)
[»] scaffold0700 (2 HSPs)
scaffold0700 (8-170)||(4349-4509)
scaffold0700 (199-251)||(4625-4677)
[»] scaffold0015 (2 HSPs)
scaffold0015 (39-170)||(32489-32619)
scaffold0015 (190-251)||(33252-33313)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 34234688 - 34234459
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacata 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||       |||||||||||||||||||||    
T  34234688 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtcggtcggtgttcgttctatttttt-gtggtattacgcctcgacata 34234590  T
Q  108 ttttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgt 207  Q
    ||||||| || | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  34234589 ttttttg-gttgctggttgtgtaattttgatatttacggtcaatatgtaactaatattatataaatatatgaaatgaattattttggatcatttacgtgt 34234491  T
Q  208 cattaagtgtgtttaaattattacggatcatt 239  Q
    ||||||||||||||||||||||||||||||||    
T  34234490 cattaagtgtgtttaaattattacggatcatt 34234459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 55527275 - 55527517
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacata 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||       |||||||||| || |||||||    
T  55527275 cgaagaatatgcactatcactagtctagttagataggttatgacacttttgggtcggtcggtgttcgtcctattttttggtggtattacaccccgacata 55527374  T
Q  108 ttttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgt 207  Q
    ||||||| ||||  |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  55527375 ttttttg-gtggccggttgtgtaattttgatatttatggccaacatgtaactaatattatataaatatatgaaatgaattattttggatcgtttacgtgt 55527473  T
Q  208 cattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    ||||||| |||||||||||||||||| | |||||||||||||||    
T  55527474 cattaagcgtgtttaaattattacgggtaattaccggcgaattt 55527517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 24973509 - 24973750
Alignment:
Q  9 gaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatat 108  Q
    |||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| ||       |||||||||| || ||||||||    
T  24973509 gaagaataggcactatcaatagtctagttagataggttatgacacttttgggtcggtcggtgttcgtcatatttttttgtggtattacaccccgacatat 24973608  T
Q  109 tttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgtc 208  Q
    |||||| ||||  |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24973609 tttttg-gtggccggttgtgtaattttgatatttatggccaaaatgtaactaatattatataaatatatgaaatgaattattttggatcgtttacgtgtc 24973707  T
Q  209 attaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    ||||||||||||||||||||||| | | |||||||||||||||    
T  24973708 attaagtgtgtttaaattattacaggtaattaccggcgaattt 24973750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 133 - 251
Target Start/End: Complemental strand, 45245203 - 45245085
Alignment:
Q  133 tttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgtcattaagtgtgtttaaattattacg 232  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45245203 tttgatatttatggccaatatgtaactaatattatataaatatatgaaatgaattattttggatcgtttacgtgtcattaagtgtgtttaaattattacg 45245104  T
Q  233 gatcattaccggcgaattt 251  Q
    | |||||||||||||||||    
T  45245103 ggtcattaccggcgaattt 45245085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 50007486 - 50007333
Alignment:
Q  39 tataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatattttttgtgtggttggttgtgtaattttgat 138  Q
    ||||||||||||||||| | |||| ||||||||||||||||       |||||||||| || |||||||||||||| ||||  ||||  ||||||| |||    
T  50007486 tataggttatgacacttataggtcggtcggtgttcgtcctattttttggtggtattacaccccgacatattttttg-gtggccggttaagtaatttggat 50007388  T
Q  139 atttacggccaatatgtaactaatattatata-aatatatgaaatgaattatttt 192  Q
    ||||  |||||||||||||||||||||||||| | || |||||||||||||||||    
T  50007387 atttttggccaatatgtaactaatattatatatattaaatgaaatgaattatttt 50007333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 18486722 - 18486783
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| ||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||    
T  18486722 tttggatcgtttacgtgtcattaagtgtgtttaagtgattacgggtcattaccggcgaattt 18486783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 50335252 - 50335099
Alignment:
Q  39 tataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatattttttgtgtggttggttgtgtaattttgat 138  Q
    |||| |||| ||||||| | |||| ||||||||||||||||       |||||||||| || |||| ||||||||| ||||  | || |||||||| |||    
T  50335252 tataagttaggacacttataggtcggtcggtgttcgtcctattttttggtggtattacaccccgacgtattttttg-gtggccgattatgtaatttggat 50335154  T
Q  139 atttacggccaatatgtaactaatattatata-aatatatgaaatgaattatttt 192  Q
    ||||  ||| |||||||||||||||||||||| | || |||||||||||||||||    
T  50335153 atttgtggctaatatgtaactaatattatatatattaaatgaaatgaattatttt 50335099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 41420271 - 41420332
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| ||||||||||||||||||||||||||||| | ||||||  |||||||||||||||||    
T  41420271 tttggatcgtttacgtgtcattaagtgtgtttaagtgattacgagtcattaccggcgaattt 41420332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 156509 - 156448
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| |||||||||||||||| |||||||||||| | ||||||| ||||||||| |||||||    
T  156509 tttggatcgtttacgtgtcatcaagtgtgtttaagtgattacgggtcattaccgacgaattt 156448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 1939003 - 1939064
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| ||||||||||||||||||| ||||||||| | ||||| | |||||||||||||||||    
T  1939003 tttggatcgtttacgtgtcattaaatgtgtttaagtgattacaggtcattaccggcgaattt 1939064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 41784362 - 41784415
Alignment:
Q  127 tgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaa 180  Q
    |||||||| |||||||  |  |||||||||||||||||||||||||||||||||    
T  41784362 tgtaatttggatatttgtgatcaatatgtaactaatattatataaatatatgaa 41784415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 41785205 - 41785266
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| ||||||||||||||||||| |||| |||| | ||||||| |||||||| ||| ||||    
T  41785205 tttggatcgtttacgtgtcattaattgtgattaagtgattacgggtcattaccagcgtattt 41785266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 39646469 - 39646234
Alignment:
Q  15 tatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatattttttg 114  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |       |||||||||| || ||||||||||||||    
T  39646469 tatgcactatcactagtctagttagataggttatgacacttttgggtcggtcggtgttcgtcccatttttttgtggtattacaccccgacatattttttg 39646370  T
Q  115 tgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgtcattaag 214  Q
     ||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39646369 -gtggcaggttgtgtaattttgatatttatggccaatatgtaactaatattatataaatatatgaaatgaattattttggatcgtttacgtgtcattaag 39646271  T
Q  215 tgtgtttaaattattacggatcattaccggcgaattt 251  Q
    ||||||||||||||||||| |||||||||||||||||    
T  39646270 tgtgtttaaattattacgggtcattaccggcgaattt 39646234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 35068659 - 35068901
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacata 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| ||       |||||||||| ||  ||||||    
T  35068659 cgaagaatatgcactatcactagtctagttagataggttatgacacttttgagtcggtcggtgttcgtcatatttttttgtggtattacaccctgacata 35068758  T
Q  108 ttttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgt 207  Q
    ||||||| ||||  |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35068759 ttttttg-gtggccggttgtataattttgatatttatggccaatatgtaactaatattatataaatatatgaaatgaattattttggatcgtttacgtgt 35068857  T
Q  208 cattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||||| ||||||||||||||||||| |||||||||||||||||    
T  35068858 cattaattgtgtttaaattattacgggtcattaccggcgaattt 35068901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 34084793 - 34084556
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacata 107  Q
    |||||||||||||||||||||||| |||||| ||||||||||||| ||||||||| ||     |||||| ||       |||||||||| || |||||||    
T  34084793 cgaagaatatgcactatcactagtttagttagataggttatgacatttttgggtcggt-----ttcgtcatattttttggtggtattacaccccgacata 34084699  T
Q  108 ttttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgt 207  Q
    ||||||| ||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  34084698 ttttttg-gtggtcggttgtgtaattttgatatttatggccaatacgtaactaatattatataaatatatgaaatgaactattttggatcgtttacgtgt 34084600  T
Q  208 cattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||||||||||||||||||||||||| | |||||||||||||||    
T  34084599 cattaagtgtgtttaaattattacgggtaattaccggcgaattt 34084556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 19871621 - 19871763
Alignment:
Q  109 tttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgtc 208  Q
    ||||| |||||  |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19871621 tttttttgtggccggttgtgtaattttgatatttatggtcaatatgtaactaatattatataaatatatgaaatgaattattttggatcgtttacgtgtc 19871720  T
Q  209 attaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    || |||||||||||||||||||||| | |||||||||||||||    
T  19871721 ataaagtgtgtttaaattattacgggtaattaccggcgaattt 19871763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 19871550 - 19871620
Alignment:
Q  9 gaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtccta 79  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||    
T  19871550 gaagaatatgcactatcactagtctagttagataggttatgacacttttgggtcggtcggtgttcatccta 19871620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 30930557 - 30930404
Alignment:
Q  39 tataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatattttttgtgtggttggttgtgtaattttgat 138  Q
    ||||||||| ||||||| | |||| ||||||||||||||||       |||||||| | || |||| ||||||||| ||||  |||| |||||||| |||    
T  30930557 tataggttaggacacttataggtcggtcggtgttcgtcctatttttttgtggtatttcaccccgacgtattttttg-gtggccggttatgtaatttggat 30930459  T
Q  139 atttacggccaatatgtaactaatattatata-aatatatgaaatgaattatttt 192  Q
    ||||  ||| |||||||||||||||||||||| | || |||||||||||||||||    
T  30930458 atttgtggcaaatatgtaactaatattatatatattaaatgaaatgaattatttt 30930404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 14439779 - 14439627
Alignment:
Q  39 tataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatattttttgtgtggttggttgtgtaattttgat 138  Q
    ||||||||| ||||||| | |||| ||||||||| ||||||       |||||||||| || | |  ||||||||| ||||  |||| |||||||| |||    
T  14439779 tataggttaggacacttataggtcggtcggtgtt-gtcctattttttggtggtattacaccccaatgtattttttg-gtggccggttatgtaatttggat 14439682  T
Q  139 atttacggccaatatgtaactaatattatata-aatatatgaaatgaattatttt 192  Q
    ||||  |||||||||||||||||||||||||| | || |||||||||||||||||    
T  14439681 atttgtggccaatatgtaactaatattatatatattaaatgaaatgaattatttt 14439627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 7666197 - 7666145
Alignment:
Q  199 tttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    ||||||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  7666197 tttacgtgtcattaagtatgtttaaattattacgggtaattaccggcgaattt 7666145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 170
Target Start/End: Complemental strand, 20514810 - 20514680
Alignment:
Q  39 tataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatattttttgtgtggttggttgtgtaattttgat 138  Q
    ||||| ||||||||||||| |||| |||| |||||||||||       ||| |||||| || | |||| ||||||| ||||  |||| |||||||| ||     
T  20514810 tatagattatgacacttttaggtcggtcgatgttcgtcctattttttggtgatattacaccccaacat-ttttttgggtggccggttatgtaatttggag 20514712  T
Q  139 atttacggccaatatgtaactaatattatata 170  Q
    ||||  ||||||||||||||||||||||||||    
T  20514711 atttgtggccaatatgtaactaatattatata 20514680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 30530697 - 30530751
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtc 62  Q
    |||||| |||||||||||| ||||||||||| |||||||||||||||||| ||||    
T  30530697 cgaagattatgcactatcattagtctagttagataggttatgacactttttggtc 30530751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 170
Target Start/End: Original strand, 54336115 - 54336245
Alignment:
Q  39 tataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatattttttgtgtggttggttgtgtaattttgat 138  Q
    ||||||||||||| ||||| |||| |||  |||| ||||||       ||||||||||  | |||| |||||| || ||||| |||| |||||||| |||    
T  54336115 tataggttatgactctttttggtcggtcaatgtttgtcctattttctggtggtattacatcccgacgtattttctg-gtggtcggttatgtaatttggat 54336213  T
Q  139 atttacggccaatatgtaactaatattatata 170  Q
    ||||  ||||||||||||||||||||||||||    
T  54336214 atttgtggccaatatgtaactaatattatata 54336245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 27933682 - 27933829
Alignment:
Q  16 atgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatattttttgt 115  Q
    ||||||||||||||||||| ||| || | ||||||||||||| |    ||||||||||||||||       |||||||||| |  |||| |||||||||     
T  27933682 atgcactatcactagtctaattagattgattatgacactttttg----gtcggtgttcgtcctattttttggtggtattacac--cgacgtattttttg- 27933774  T
Q  116 gtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatata 170  Q
    ||||  |||| ||||||||  ||||||  ||||||||||||||||| ||||||||    
T  27933775 gtggccggttatgtaatttgaatatttgtggccaatatgtaactaacattatata 27933829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 54336403 - 54336464
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| ||||||||||||||||||||||||||||| | ||||| | ||||||||||| |||||    
T  54336403 tttggatcgtttacgtgtcattaagtgtgtttaagtgattacaggtcattaccggcaaattt 54336464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 53771936 - 53771989
Alignment:
Q  198 gtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    ||||||||||||||||| |||||||| | ||||||| ||||||||| |||||||    
T  53771936 gtttacgtgtcattaagagtgtttaagtgattacgggtcattaccgacgaattt 53771989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 30530785 - 30530862
Alignment:
Q  102 gacatattttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaa 180  Q
    ||| ||||||||| |||||  ||| |||||||| |||||||  |  || ||||||||||||||||||||||||||||||    
T  30530785 gacgtattttttg-gtggtcagttatgtaatttggatatttgtgctcattatgtaactaatattatataaatatatgaa 30530862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 759866 - 759624
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacata 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||       |||||||||| || | |||||    
T  759866 cgaagaatatgcactatcactagtctagttagataggttatgacacttttgggtcagtcggtgttcgtcctattttttggtggtattacaccccaacata 759767  T
Q  108 ttttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgt 207  Q
    ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||    
T  759766 ttttttg-gtggtcggttgtgtaattttgatatttatggccaatatgtaactaatattatataaatatatgaaatgaattattttggatcatttgcgtgt 759668  T
Q  208 cattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  759667 cattaagtgtgtgtaaattattacgggtcattaccggcgaattt 759624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 5506065 - 5506308
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacata 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||| ||       |||||||||  || |||||||    
T  5506065 cgaagaatatgcactatcactagtctagttagataggttatgacatttttgggtcggtcggtgttcgtcatattttttggtggtattagaccccgacata 5506164  T
Q  108 ttttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgt 207  Q
    ||||||  ||||  || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  5506165 tttttttggtggccggctgtgtaattttgatatttatggccaatatgtaactaatattatataaatatatgaaatgaattattttgaattgtttacgtgt 5506264  T
Q  208 cattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||||||||||||||||||||||||| | |||||||||||||||    
T  5506265 cattaagtgtgtttaaattattacgggtaattaccggcgaattt 5506308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 28704592 - 28704351
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacata 107  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||       |||||||||| || ||||||     
T  28704592 cgaagaatatgcactatcaatagtctagttagataggttatgacacttttgggtcggtcggtgttcgtcctattttttggtggtattacaccccgacat- 28704494  T
Q  108 ttttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgt 207  Q
    ||||||| ||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28704493 ttttttg-gtggccggttgtgtaattttgatatttatggccaatatgtaactaatattatataaatatatgaaatgaattattttggatcgtttacgtgt 28704395  T
Q  208 cattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    ||||||||||||||||||||||| || ||||||| | |||||||    
T  28704394 cattaagtgtgtttaaattattaagggtcattactgacgaattt 28704351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 28678598 - 28678358
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctc-gacat 106  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||       |||||||||| || | ||||     
T  28678598 cgaagaatatgcactatcaatagtctagttagataggttatgacacttttgggtcggtcggtgttcgtcctattttttggtggtattacacccccgacaa 28678499  T
Q  107 attttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtg 206  Q
    |||||||| ||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  28678498 attttttg-gtggccagttgtgtaattttgatatttatggccaatatgtaactaatattatataaatatatgaaatgaattattttggatcgtttatgtg 28678400  T
Q  207 tcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    ||   |||||| ||||||||||||||| ||||||| |||||||||    
T  28678399 tc---aagtgtatttaaattattacgggtcattactggcgaattt 28678358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 30490427 - 30490220
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacata 107  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||| |||||| ||||||||||||| |         ||||||||| || ||| |||    
T  30490427 cgaagaatatgcactatcactagtctagttagatatgttatgacacttctgggtcggtcggtgttcgtcattttttttgttggtattacaccccgaaata 30490328  T
Q  108 ttttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgt 207  Q
    ||||||  ||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||    
T  30490327 tttttttggtggccggttgtgtaattttgatatttatggccaatatgtaactaatattatataaatatatgaaatgaattgttttggattgtttacgtgt 30490228  T
Q  208 cattaagt 215  Q
    ||||||||    
T  30490227 cattaagt 30490220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 34016560 - 34016425
Alignment:
Q  116 gtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgtcattaagt 215  Q
    |||| |||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  34016560 gtggctggttgtgtaattttgatatttattgtcaatatgtaactaatattatataaatatatgaaatgatttattttggatcgtttacgtgtcattaagt 34016461  T
Q  216 gtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||||||||||||||| | |||||||||||||||||    
T  34016460 gtgtttaaattattaccggtcattaccggcgaattt 34016425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 26506760 - 26506600
Alignment:
Q  17 tgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatattttttgtg 116  Q
    |||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||       |||||||||  |  |||| ||||||||| |    
T  26506760 tgcactatcactagtctagttagataggttatgacactttttggttcgtcggtgttcgtcctattttttggtggtattatac--cgacgtattttttg-g 26506664  T
Q  117 tggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaa 180  Q
    |||  |||| |||||||| |||||||  ||||||||||||||||||||||||||||||||||||    
T  26506663 tggccggttatgtaatttggatatttgtggccaatatgtaactaatattatataaatatatgaa 26506600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 17343783 - 17343936
Alignment:
Q  15 tatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatattttttg 114  Q
    |||||||||||||||| |||||||  ||||||||||||||||| | || ||||||||||||||||       |||||||||| || |||| |||||||||    
T  17343783 tatgcactatcactagcctagttagctaggttatgacactttttgatcggtcggtgttcgtccta-ttttttgtggtattacaccccgacgtattttttg 17343881  T
Q  115 tgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatata 170  Q
     ||||  |||| |||||||| |||||||| ||||||||| ||||||||||||||||    
T  17343882 -gtggccggttatgtaatttggatatttatggccaatatataactaatattatata 17343936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 170
Target Start/End: Complemental strand, 20884450 - 20884320
Alignment:
Q  39 tataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatattttttgtgtggttggttgtgtaattttgat 138  Q
    ||||||||| ||||||| | |||| ||||||||||||||||       ||||||||||  | |||| ||||||||| ||||  |||| ||||||||||||    
T  20884450 tataggttaggacacttataggtcggtcggtgttcgtcctattttttggtggtattacatcccgacgtattttttg-gtggccggttatgtaattttgat 20884352  T
Q  139 atttacggccaatatgtaactaatattatata 170  Q
    ||||  ||||||||||||||||||||||||||    
T  20884351 atttgtggccaatatgtaactaatattatata 20884320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 38740219 - 38740280
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| ||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||    
T  38740219 tttggatcgtttacgtgtcattaagtgtgtttaagtgattacgggtcattaccggcgaattt 38740280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 35049188 - 35049127
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| ||||||||||||||||||||||||||||| | |||| || |||||||||||||||||    
T  35049188 tttggatcgtttacgtgtcattaagtgtgtttaagtgattatgggtcattaccggcgaattt 35049127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 20883375 - 20883322
Alignment:
Q  198 gtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||||||||||||||||||||||||| | ||||||| ||||||||| |||||||    
T  20883375 gtttacgtgtcattaagtgtgtttaagtgattacgggtcattaccgacgaattt 20883322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 26505964 - 26505903
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| ||||||||| |||||||||||||| |||| | |||||| ||||||| || |||||||    
T  26505964 tttggatcgtttacatgtcattaagtgtgattaagtgattacgcatcattaacgacgaattt 26505903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 33402103 - 33401861
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacata 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||          |||||||||| || |||||||    
T  33402103 cgaagaatatgcactatcactagtctagttagataggttatgacacttttgggtcggtcggtgttcgtcaattttttttgtggtattacaccccgacata 33402004  T
Q  108 ttttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgt 207  Q
    ||||||| ||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33402003 ttttttg-gtggccggttgtgtaattttgatatttatggccaatatgtaactaatattatataaatatatgaaatgaattattttggatcgtttacgtgt 33401905  T
Q  208 cattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  33401904 cattaagtgtgtttaaattattacggataattaccggcgaattt 33401861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 33618529 - 33618287
Alignment:
Q  9 gaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcc-tannnnnnngtggtattacgcctcgacata 107  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||  |        |||||||||| || |||||||    
T  33618529 gaagaatatgcattatcactagtctagttagataggttatgacacttttgggtcggtcagtgttcgtcaatttttttttgtggtattacaccccgacata 33618430  T
Q  108 ttttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgt 207  Q
    ||||||| ||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33618429 ttttttg-gtggccggttgtgtaattttgatatttatggccaatatgtaactaatattatataaatatatgaaatgaattattttggatcgtttacgtgt 33618331  T
Q  208 cattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  33618330 cattaagtgtgtttaaattattacggataattaccggcgaattt 33618287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 28475458 - 28475217
Alignment:
Q  9 gaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatat 108  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||       |||||||||| || |  |||||    
T  28475458 gaagaatatgcactatcgctagtctagttagataggttatgacacttttgggtcggtcggtgttcgtcctattttttggtggtattacaccccatcatat 28475359  T
Q  109 tttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgtc 208  Q
    |||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  28475358 tttttg-gtggtcggttgtgtaattttgatatttacagccaatatgtaactaatattatataaatatatgaaatgaattattttggatcgtttatgtgtc 28475260  T
Q  209 attaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    ||||||||||||||||||||||| | ||||| || ||||||||    
T  28475259 attaagtgtgtttaaattattacaggtcattgccagcgaattt 28475217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 48026492 - 48026734
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacata 107  Q
    ||||||||| ||||||| ||||||||||||| |||||||||||||||||||| |  ||||||||||||| ||       |||||||||| || |||||||    
T  48026492 cgaagaatacgcactatgactagtctagttagataggttatgacacttttggataggtcggtgttcgtcatattttttggtggtattacaccccgacata 48026591  T
Q  108 ttttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgt 207  Q
    |||||||  |||  |||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||    
T  48026592 ttttttga-tggccggttgtgtaattttgatatttatggtcaatatgtaactaatattatataaatatatgtaatgaattattttggatcgtttacatgt 48026690  T
Q  208 cattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||||||||||||||||||||||||| | ||||||| |||||||    
T  48026691 cattaagtgtgtttaaattattacgggtaattaccgacgaattt 48026734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 87 - 251
Target Start/End: Complemental strand, 35564102 - 35563949
Alignment:
Q  87 gtggtattacgcctcgacatattttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaat 186  Q
    |||||||||| || |||||||||||||| | ||    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    |||    
T  35564102 gtggtattacaccccgacatattttttg-gaggccatttgtgtaattttgatatttatggccaatatgtaactaatattatataaatatatga----aat 35564008  T
Q  187 tattttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    ||||||| || |||||||||||||      ||||||||||||||| | | |||||||||||||||    
T  35564007 tattttggattgtttacgtgtcat------tgtttaaattattacaggtaattaccggcgaattt 35563949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 7319007 - 7318857
Alignment:
Q  15 tatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatattttttg 114  Q
    |||||| ||||||||||||||||| |||||||||||||||||| |||| ||||||||||||| ||       || ||||||  | ||||||||||||||     
T  7319007 tatgcattatcactagtctagttagataggttatgacactttttggtcggtcggtgttcgtcatatttttttgtagtatta--catcgacatatttttt- 7318911  T
Q  115 tgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattata 168  Q
    ||||   |||| |||||||| |||||||  ||||||||||| ||||||||||||    
T  7318910 tgtgtccggttatgtaatttggatatttgtggccaatatgtgactaatattata 7318857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 12066928 - 12067081
Alignment:
Q  39 tataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatattttttgtgtggttggttgtgtaattttgat 138  Q
    ||||||||| |||| || | |||| || |||||||||||||       |||||||||| || |||| ||||||||| ||||  |||| |||||||| |||    
T  12066928 tataggttaggacatttataggtcggttggtgttcgtcctattttttggtggtattacaccccgacgtattttttg-gtggccggttatgtaatttggat 12067026  T
Q  139 atttacggccaatatgtaactaatattatata-aatatatgaaatgaattatttt 192  Q
    ||||  |||||||||||||||||||||||||| | || |||||||||||||||||    
T  12067027 atttgtggccaatatgtaactaatattatatatattaaatgaaatgaattatttt 12067081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 177
Target Start/End: Complemental strand, 30704229 - 30704112
Alignment:
Q  59 ggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatattttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaac 158  Q
    |||| ||||||||||||||||       |||||||||| || ||||||||||||||  |||  |||| |||||||| |||||||  ||||||||||||||    
T  30704229 ggtcggtcggtgttcgtcctatattttggtggtattacaccccgacatattttttga-tggccggttatgtaatttggatatttgtggccaatatgtaac 30704131  T
Q  159 taatattatataaatatat 177  Q
    |||||||||||| ||||||    
T  30704130 taatattatatatatatat 30704112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 1181148 - 1181209
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| |||||||| |||||||||||||||||||| | ||||||| |||||||||||||||||    
T  1181148 tttggatcgtttatgtgtcattaagtgtgtttaagtgattacgggtcattaccggcgaattt 1181209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 12067650 - 12067711
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| |||||||| |||||||||||||||||||| | ||||||| |||||||||||||||||    
T  12067650 tttggatcgtttatgtgtcattaagtgtgtttaagtgattacgggtcattaccggcgaattt 12067711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 30703466 - 30703405
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| ||||||||| ||||||||||||||||||| | ||||||||||||||||||| |||||    
T  30703466 tttggatcgtttacatgtcattaagtgtgtttaagtgattacggatcattaccggcaaattt 30703405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 23943295 - 23943356
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| |||| |||||||||||||||||||||||| | ||||||  |||||||||||||||||    
T  23943295 tttggatcgcttacgtgtcattaagtgtgtttaagtgattacgtgtcattaccggcgaattt 23943356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 23942632 - 23942698
Alignment:
Q  127 tgtaattttgatatttacggccaatatgtaactaatattatata-aatatatgaaatgaattatttt 192  Q
    ||||||||  ||||||  |||||||||||||||||||||||||| | || |||||||||||||||||    
T  23942632 tgtaatttgtatatttgtggccaatatgtaactaatattatatatattaaatgaaatgaattatttt 23942698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 25818809 - 25818842
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaa 223  Q
    |||| |||||||||||||||||||||||||||||    
T  25818809 tttggatcgtttacgtgtcattaagtgtgtttaa 25818842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 5966646 - 5966886
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacata 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||       |||||||||| ||||||||||    
T  5966646 cgaagaatatgcactatcactagtctagttagataggttatgacacttttgggtcggtcggtgttcgtcctatttttttgtggtattacacctcgacata 5966745  T
Q  108 ttttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgt 207  Q
    ||||||| |||   |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  5966746 ttttttg-gtgaccggttgtgtaattttgatatttatgaccaatatgtaactaatattatataaatatatgaaatgaattagtttggatcgtttacgtgt 5966844  T
Q  208 cattaagtgtgtttaaattattacggatcattaccggcgaat 249  Q
    || ||||||||||||||||||||||| ||||||||| |||||    
T  5966845 cactaagtgtgtttaaattattacgggtcattaccgacgaat 5966886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 34278955 - 34279197
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacata 107  Q
    |||||||||||||||||||||| | |||||| |||||||||||||||||||| ||  |||||||||||| ||       |||||||||| || |||||||    
T  34278955 cgaagaatatgcactatcactattttagttagataggttatgacacttttggatcgatcggtgttcgtcttattttttggtggtattacaccccgacata 34279054  T
Q  108 ttttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgt 207  Q
    ||||||| ||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34279055 ttttttg-gtggtcggttgtgtaatttttatatttatggccaatatgtaactaatattatataaatatatgaaatgaattattttggatcgtttacgtgt 34279153  T
Q  208 cattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||||||||||||||||||||||||| | ||||||| |||||||    
T  34279154 cattaagtgtgtttaaattattacgggtaattaccgacgaattt 34279197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 41 - 192
Target Start/End: Complemental strand, 5016619 - 5016468
Alignment:
Q  41 taggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatattttttgtgtggttggttgtgtaattttgatat 140  Q
    ||||||| ||||||| | |||| ||||||||||||| ||       |||||||||| ||||||| ||||||||| ||||  |||| |||||||| |||||    
T  5016619 taggttaggacacttataggtcggtcggtgttcgtcttatttttttgtggtattacacctcgacgtattttttg-gtggccggttatgtaatttggatat 5016521  T
Q  141 ttacggccaatatgtaactaatattatata-aatatatgaaatgaattatttt 192  Q
    ||  |||||||||||||||||||||||||| | || ||||||| |||||||||    
T  5016520 ttgtggccaatatgtaactaatattatatatattaaatgaaataaattatttt 5016468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 15893571 - 15893493
Alignment:
Q  101 cgacatattttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaa 180  Q
    |||||| ||||||| ||||| |||| |||||||| |||||||  ||||||||||||| ||||||||||||||||||||||    
T  15893571 cgacattttttttg-gtggtcggttatgtaatttggatatttgtggccaatatgtaattaatattatataaatatatgaa 15893493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 5075903 - 5075964
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| ||||||||||||||||||||||| ||||| | ||||| | |||||||||||||||||    
T  5075903 tttggatcgtttacgtgtcattaagtgtttttaagtcattacaggtcattaccggcgaattt 5075964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 30944382 - 30944435
Alignment:
Q  127 tgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaa 180  Q
    |||||||| |||||||  ||||||||| ||||||||||||||||||||||||||    
T  30944382 tgtaatttggatatttgtggccaatatctaactaatattatataaatatatgaa 30944435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 41601259 - 41601320
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| ||||||||||||||||||||||||||||| | ||||||  ||||||||| |||||||    
T  41601259 tttggatcgtttacgtgtcattaagtgtgtttaagtgattacgagtcattaccgacgaattt 41601320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 5015849 - 5015788
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| ||||||||||||||||||||||||||||| | |||| || |||||||  ||||||||    
T  5015849 tttggatcgtttacgtgtcattaagtgtgtttaagtgattatgggtcattactagcgaattt 5015788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 244
Target Start/End: Complemental strand, 38386890 - 38386655
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacata 107  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| ||       |||||||||| || |||||||    
T  38386890 cgaagaatatgcactatcactagtctagttagataggttatgacacttttggatcggtcggtgttcgtcatattttttggtggtattacaccccgacata 38386791  T
Q  108 ttttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgt 207  Q
    ||||||| ||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38386790 ttttttg-gtggccggttgtgtaattttgatatttatggccaatatgtaactaatattatataaatatatgaaatgaattattttggatcgtttacgtgt 38386692  T
Q  208 cattaagtgtgtttaaattattacggatcattaccgg 244  Q
    |||||||||||||||||||||||||| | ||||||||    
T  38386691 cattaagtgtgtttaaattattacgggtaattaccgg 38386655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 38048349 - 38048125
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacata 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||       |||||||||| || |||||||    
T  38048349 cgaagaatatgcactatcactagtctagttagataggttatgacacttttgggtcggtcggtgttcgtcatattttttggtggtattacaccccgacata 38048250  T
Q  108 ttttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgt 207  Q
    ||||||| ||||  | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38048249 ttttttg-gtggccgattgtgtaattttgatatttatggccaatatgtaactaatattatataaatatatgaaatgaattattttggatcgtttacgtgt 38048151  T
Q  208 cattaagtgtgtttaaattattacgg 233  Q
    ||||||||| ||||||||||||||||    
T  38048150 cattaagtgagtttaaattattacgg 38048125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 19363551 - 19363793
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacata 107  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||  ||| |||||||| ||       |||||||||| || |||||||    
T  19363551 cgaagaatatgcactatcactagtctagttagataggttatgacacttttggatcgatcgatgttcgtcatatattttagtggtattacaccccgacata 19363650  T
Q  108 ttttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgt 207  Q
    ||||||| ||||  |||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||    
T  19363651 ttttttg-gtggccggttgtgtaattttgatatttatggctaatatgtaactaatattatatatatatatgaaatgaattattttggatcgtttacctgt 19363749  T
Q  208 cattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||||||||||||||||||||||| | |||||||||||||||||    
T  19363750 cattaagtgtgtttaaattattacaggtcattaccggcgaattt 19363793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 4543 - 4783
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacata 107  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| | || ||||||||||||| ||       |||||||||| || |||||||    
T  4543 cgaagaatatgcactatcactagtctagttagataggttatgacacttttagatcggtcggtgttcgtcatattttttggtggtattacaccccgacata 4642  T
Q  108 ttttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgt 207  Q
    ||||||| ||||  |||||||||||||||||||||| |||||||||||||||||||||| ||||||| || ||||||||||||||| |||||||||||||    
T  4643 ttttttg-gtggccggttgtgtaattttgatatttatggccaatatgtaactaatattaaataaataaataaaatgaattattttggatcgtttacgtgt 4741  T
Q  208 cattaagtgtgtttaaattattacggatcattaccggcgaat 249  Q
    |||||||||||||||||||||||||| | |||| ||||||||    
T  4742 cattaagtgtgtttaaattattacgggtaattaacggcgaat 4783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 44225335 - 44225488
Alignment:
Q  39 tataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatattttttgtgtggttggttgtgtaattttgat 138  Q
    ||||||||| ||||||| | |||| ||||||||||||||||       |||||||||| || |||| ||||||||| ||||  |||| |||||||| |||    
T  44225335 tataggttaggacacttataggtcggtcggtgttcgtcctattttttggtggtattacaccccgacgtattttttg-gtggccggttatgtaatttggat 44225433  T
Q  139 atttacggccaatatgtaactaatattatata-aatatatgaaatgaattatttt 192  Q
    ||||  |||||||||||||||||||||||||| | || |||||||||||||||||    
T  44225434 atttgtggccaatatgtaactaatattatatatattaaatgaaatgaattatttt 44225488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 23943354 - 23943415
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| ||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||    
T  23943354 tttggatcgtttacgtgtcattaagtgtgtttaagtgattacgggtcattaccggcgaattt 23943415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 44226109 - 44226170
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| ||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||    
T  44226109 tttggatcgtttacgtgtcattaagtgtgtttaagtgattacgggtcattaccggcgaattt 44226170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 170
Target Start/End: Complemental strand, 2368921 - 2368802
Alignment:
Q  50 acacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatattttttgtgtggttggttgtgtaattttgatatttacggcca 149  Q
    |||||||| |||| ||||||||||||||||       |||||||||| || |||| ||||||||| ||||  |||  |||||||| |||||||  |||||    
T  2368921 acactttttggtcggtcggtgttcgtcctattttttggtggtattacaccccgacgtattttttg-gtggccggtcatgtaatttggatatttgtggcca 2368823  T
Q  150 atatgtaactaatattatata 170  Q
    |||||||||||||||||||||    
T  2368822 atatgtaactaatattatata 2368802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 24503484 - 24503537
Alignment:
Q  127 tgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaa 180  Q
    |||||||| |||||||  ||||||||| ||||||||||| ||||||||||||||    
T  24503484 tgtaatttggatatttgtggccaatatttaactaatattgtataaatatatgaa 24503537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 26151807 - 26151847
Alignment:
Q  16 atgcactatcactagtctagttatataggttatgacactttt 57  Q
    ||||||||||||||| ||||||| ||||||||||||||||||    
T  26151807 atgcactatcactag-ctagttagataggttatgacactttt 26151847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 4319800 - 4319558
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacata 107  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| |       |||||||||| ||  ||||||    
T  4319800 cgaagaatatgcactatcactagtctagttagataggttgtgacacttttgggtcggtcggtgttcgtccaattttttggtggtattacaccctgacata 4319701  T
Q  108 ttttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgt 207  Q
    ||||||| ||||  |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  4319700 ttttttg-gtggccggttgtgtaattttgatatttatggccaatatgtaactattattatataaatatatgaaatgaattattttggatcgtttacgtgt 4319602  T
Q  208 cattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||||||||||| ||||||||||||| |||| ||||||||||||    
T  4319601 cattaagtgtgtataaattattacgggtcatcaccggcgaattt 4319558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 32275176 - 32274933
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacata 107  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||  ||||||||||||  ||       |||||||||| || |||||||    
T  32275176 cgaagaatatgcactatcactagtcttgttagataggttatgacacttttgggttggtcggtgttcgttatattttttggtggtattacaccccgacata 32275077  T
Q  108 ttttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgt 207  Q
    ||||||  |||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32275076 tttttttggtggctggttgtgtaattttgatatttatggccaatatgtacctaatattatataaatatatgaaatgaattattttggatcgtttacgtgt 32274977  T
Q  208 cattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||    
T  32274976 cattgagtgtgtttaaattattacgggtcattatcggcgaattt 32274933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 12704532 - 12704291
Alignment:
Q  9 gaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatat 108  Q
    ||||| |||||| ||||||||||||||||| ||||| ||||||| ||||||||| ||| ||||||||||||       |||||||||| || ||||||||    
T  12704532 gaagattatgcaatatcactagtctagttagataggatatgacatttttgggtcggtcagtgttcgtcctattttttggtggtattacaccccgacatat 12704433  T
Q  109 tttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgtc 208  Q
    |||||| ||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  12704432 tttttg-gtggccggttgtgtaattttgatatttatggccaatatgtaactaatattatataaatatatgaaatgaattattttggatcgtttacgtatc 12704334  T
Q  209 attaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  12704333 attaagtgtgtttaaattattacgggtcattaccggcgaattt 12704291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 31484354 - 31484111
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnng-tggtattacgcctcgacat 106  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||       | ||||||||| || ||| ||    
T  31484354 cgaagaatatgcactatcactagtctagttagataggttatgacccttttgggtcggtcggtgttcgtcctatttttttggtggtattacaccccgaaat 31484255  T
Q  107 attttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtg 206  Q
    ||||||||  |||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31484254 attttttga-tggccggttgtgtaattttgatatttatggccaatatgtaactaatattatataaatatatgaaatgaattattttggatcgtttacgtg 31484156  T
Q  207 tcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||||||||||||||||||| ||||||  ||||||||| ||||||    
T  31484155 tcattaagtgtgtttaaattgttacgggacattaccggtgaattt 31484111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 1030592 - 1030745
Alignment:
Q  39 tataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatattttttgtgtggttggttgtgtaattttgat 138  Q
    ||||||||| ||||||| | |||| ||||||||||||||||       |||||||||| || |||| ||||||||| ||||  |||| |||||||| |||    
T  1030592 tataggttaggacacttataggtcggtcggtgttcgtcctattttttggtggtattacaccccgacttattttttg-gtggccggttatgtaatttggat 1030690  T
Q  139 atttacggccaatatgtaactaatattatata-aatatatgaaatgaattatttt 192  Q
    ||||  |||||||||||||||||||||||||| | || |||| ||||||||||||    
T  1030691 atttgtggccaatatgtaactaatattatatatattaaatgagatgaattatttt 1030745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 1031372 - 1031433
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||    
T  1031372 tttggatcgtttacgtgtcattaagtgtgtttaaatgattacgggtcattaccgacgaattt 1031433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 8273951 - 8273709
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacata 107  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||||||       |||||||||| || |||||||    
T  8273951 cgaagaatatgcactatcactagtttagttagataggttatgacacttttgggtcggtcgatgttcgtcctatttttttgtggtattacaccccgacata 8273852  T
Q  108 ttttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattattttgtatcgtttacgtgt 207  Q
    ||||||| ||||  |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  8273851 ttttttg-gtggccggttgtgtaattttgatatttatggtcaatatgtaactaatattatataaatatatgaaatgaattattttggatcgtttatgtgt 8273753  T
Q  208 cattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||||||||| ||||||||||||||  |||||||||| ||||||    
T  8273752 cattaagtgtttttaaattattacgagtcattaccggtgaattt 8273709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 26225341 - 26225153
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacata 107  Q
    |||||| ||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||||||||||       |||||||||| || |||||||    
T  26225341 cgaagattatgcactatcactagtctaggtagatacgttatgacacttttgggtcggtcggtgttcgtcctatttttttgtggtattacaccccgacata 26225242  T
Q  108 ttttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaacta------atattatataaatatatgaaatgaattatttt 192  Q
    ||||||| ||||  | ||||||||||| |||||||| |  |||||||||||||      ||||||||||||||||| ||||||||||||||    
T  26225241 ttttttg-gtggccgattgtgtaatttggatatttatgatcaatatgtaactatattatatattatataaatatat-aaatgaattatttt 26225153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 35003716 - 35003891
Alignment:
Q  15 tatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatattttttg 114  Q
    |||||||||||| ||| ||||||| |||||||||| ||||||| |||| ||||||||||||||||       |||||||||| || |||  |||||||||    
T  35003716 tatgcactatcaatagcctagttagataggttatgtcacttttaggtc-gtcggtgttcgtcctattttctggtggtattacaccccgatgtattttttg 35003814  T
Q  115 tgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaaatgaattatttt 192  Q
     ||||| || | |||||||| |||||||  || |||||||||||||||||||||||||||||||||||||| ||||||    
T  35003815 -gtggtcggatatgtaatttggatatttgtggtcaatatgtaactaatattatataaatatatgaaatgaaatatttt 35003891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 170
Target Start/End: Complemental strand, 9827851 - 9827724
Alignment:
Q  42 aggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatattttttgtgtggttggttgtgtaattttgatatt 141  Q
    |||||| ||||||| | |||| ||||||||||||| ||       |||||||||| || |||| ||||||||| ||||  |||| |||||||| ||||||    
T  9827851 aggttaggacacttataggtcggtcggtgttcgtcttatttttttgtggtattacaccccgacgtattttttg-gtggccggttatgtaatttggatatt 9827753  T
Q  142 tacggccaatatgtaactaatattatata 170  Q
    |  ||||||||||||||||||||||||||    
T  9827752 tgtggccaatatgtaactaatattatata 9827724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 26224547 - 26224486
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| ||||||||||||||||||||||||||||| | ||||||| ||||||||| |||||||    
T  26224547 tttggatcgtttacgtgtcattaagtgtgtttaagtgattacgggtcattaccgacgaattt 26224486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 170
Target Start/End: Complemental strand, 22729008 - 22728878
Alignment:
Q  39 tataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatattttttgtgtggttggttgtgtaattttgat 138  Q
    ||||||||||||||||||| ||||  |||||||||||||||       |||||||||| || |||| || |||||| ||||   ||| | |||||| |||    
T  22729008 tataggttatgacacttttaggtcgatcggtgttcgtcctattttttggtggtattacaccccgacgta-tttttgggtggccagttatttaatttggat 22728910  T
Q  139 atttacggccaatatgtaactaatattatata 170  Q
    || |  ||||||||||||||||||||||||||    
T  22728909 atctgtggccaatatgtaactaatattatata 22728878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 19379868 - 19379919
Alignment:
Q  200 ttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| ||||||||||||||||||| | ||||||| |||||||||||||||||    
T  19379868 ttacttgtcattaagtgtgtttaagtgattacgggtcattaccggcgaattt 19379919  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 22728279 - 22728218
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| ||| ||||||||||||||| ||||||||| | ||||||| |||||||| ||||||||    
T  22728279 tttggatcatttacgtgtcattaaatgtgtttaagtcattacgggtcattaccagcgaattt 22728218  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 35004479 - 35004540
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| ||||||||||||||||||||||||||| | | ||||||| |||||| || |||||||    
T  35004479 tttggatcgtttacgtgtcattaagtgtgttttagtgattacgggtcattatcgacgaattt 35004540  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 14330179 - 14330021
Alignment:
Q  15 tatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatattttttg 114  Q
    |||||||||||||||||||||||| |||| |||||||| |||| |    ||||||||||||||||         | |||||| |  ||||  ||||||||    
T  14330179 tatgcactatcactagtctagttagatagattatgacagtttttg----gtcggtgttcgtcctattttttgtcgatattacac--cgacgcattttttg 14330086  T
Q  115 tgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatataaatatatgaa 180  Q
     ||||| |||| ||||||||  ||||||  |||||||||  ||||||||||||| |||||||||||    
T  14330085 -gtggtcggttatgtaatttgaatatttgtggccaatataaaactaatattatacaaatatatgaa 14330021  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 28758458 - 28758498
Alignment:
Q  145 ggccaatatgtaactaatattatataaatatatgaaatgaa 185  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  28758458 ggccaatatgtaactagtattatataaatatatgaagtgaa 28758498  T

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Target: scaffold0700 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0700
Description:

Target: scaffold0700; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 4349 - 4509
Alignment:
Q  8 cgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacata 107  Q
    |||||| |||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||       || ||||||| || |||| ||    
T  4349 cgaagattatgcactatcactagtctagttagataggttatgaaac-tttgggtcggtcggtgttcgtcctattttttggttgtattacaccccgacgta 4447  T
Q  108 ttttttgtgtggttggttgtgtaattttgatatttacggccaatatgtaactaatattatata 170  Q
    ||||||| ||||  | ||||||||||| |||||||| ||||||||| ||| ||||||||||||    
T  4448 ttttttg-gtggccgattgtgtaatttggatatttatggccaatatataattaatattatata 4509  T

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Target: scaffold0700; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 4625 - 4677
Alignment:
Q  199 tttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    ||||| ||||||||||||||||||| | ||||||| ||||||||||| |||||    
T  4625 tttacttgtcattaagtgtgtttaagtgattacgggtcattaccggcaaattt 4677  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 170
Target Start/End: Original strand, 32489 - 32619
Alignment:
Q  39 tataggttatgacacttttgggtccgtcggtgttcgtcctannnnnnngtggtattacgcctcgacatattttttgtgtggttggttgtgtaattttgat 138  Q
    ||||||||||||||||||| ||   ||| ||||||||||||       |||||||||| || |||| ||||||| | |||  ||| | ||||||||  ||    
T  32489 tataggttatgacactttttggcaggtcagtgttcgtcctagtttttggtggtattacaccccgacgtatttttgg-gtgactggatatgtaatttgaat 32587  T
Q  139 atttacggccaatatgtaactaatattatata 170  Q
    ||||  || |||||||||||||||||||||||    
T  32588 atttgtggacaatatgtaactaatattatata 32619  T

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Target: scaffold0015; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 33252 - 33313
Alignment:
Q  190 tttgtatcgtttacgtgtcattaagtgtgtttaaattattacggatcattaccggcgaattt 251  Q
    |||| ||||||||||||||| ||| ||||||||| | ||| | |||||||| ||||||||||    
T  33252 tttggatcgtttacgtgtcaataattgtgtttaagtgattgccgatcattaacggcgaattt 33313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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