View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0611_high_55 (Length: 251)
Name: NF0611_high_55
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_high_55 |
 | |
|
| [»] scaffold0446 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 1070918 - 1070680
Alignment:
| Q |
1 |
cagttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatga |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1070918 |
cagttcaaccatgtctcgcgcggtttctcctaaactgaggttttaccttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatga |
1070819 |
T |
|
| Q |
101 |
ttctcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaa |
200 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
1070818 |
ttctcttgtcattgctatcaggcatctagtgatgtccttccaatgattgttgaagtatgatgagcgtcattccaaatgatatcattacgtgcaacccaaa |
1070719 |
T |
|
| Q |
201 |
ttggccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
|||||||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
1070718 |
ttggccaaagaattaaagtcacccaaccagcaatgtctc |
1070680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 93 - 239
Target Start/End: Complemental strand, 53496858 - 53496712
Alignment:
| Q |
93 |
ttttatgattctcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgc |
192 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||| |||||| |||||| | |||||||| |||||| | ||||| |||||||||||||||||||| |
|
|
| T |
53496858 |
ttttatgaacctcttgtcattgctgccatgcatctagtgttgtcctcccaatgctcgttgaagtgtgatgagcatcattccaaatgacatcattacgtgc |
53496759 |
T |
|
| Q |
193 |
aacccaaattggccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
| |||||||| ||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
53496758 |
agcccaaatttgccaaagaagtaaagctacccgaccagcaatgtctc |
53496712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 239
Target Start/End: Original strand, 36310809 - 36311012
Alignment:
| Q |
32 |
aaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattctcttgtcattgctgtcatgcatctagtg |
131 |
Q |
| |
|
||||||| |||| | ||||| |||||||||| |||||||| |||| | || |||| ||||||| |||| |||||| |||||||| ||| ||||||| |
|
|
| T |
36310809 |
aaactgaattgtcaccttgcactctattatggccgtgttgcacaatcagttgtgagggttgttt-atgaacctcttgccattgctgcaatgtatctagtt |
36310907 |
T |
|
| Q |
132 |
atgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattggccaaagaagtaaagtcacccgaccaac |
231 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| |||||| ||||| |||||||||||| ||||||||||| | |||||| |||| ||||| |||||| |
|
|
| T |
36310908 |
atgtccttccgatgcttgttgaagtatgatgagtgtcattccaaataacatcattacgtacaacccaaatttgtcaaaga---aaagccacccaaccaac |
36311004 |
T |
|
| Q |
232 |
aatgtctc |
239 |
Q |
| |
|
||||||| |
|
|
| T |
36311005 |
gatgtctc |
36311012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 239
Target Start/End: Complemental strand, 55199308 - 55199188
Alignment:
| Q |
119 |
catgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattggccaaagaagtaaag |
218 |
Q |
| |
|
||||||||||||| |||||| || ||| |||||||||| |||||| |||||| ||||||||||||||||||||| |||||||| | ||||||||||||| |
|
|
| T |
55199308 |
catgcatctagtgttgtcctcccgatgcttgttgaagtgtgatgagtgtcattccaaatgacatcattacgtgcagcccaaatttgtcaaagaagtaaag |
55199209 |
T |
|
| Q |
219 |
tcacccgaccaacaatgtctc |
239 |
Q |
| |
|
|||||||||| || |||||| |
|
|
| T |
55199208 |
ccacccgaccagcagtgtctc |
55199188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 198
Target Start/End: Original strand, 42340561 - 42340754
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||| ||||| | ||||||||| ||||||||||||| ||| ||||||| || ||||||| |||| ||||||||| | ||||| |||| || |
|
|
| T |
42340561 |
ttcaaccacgtctcgcacggtttctctcaaactgagttgttgccttagactctattctgcacgtgttgcacaaccggtggtgagggctgttt-atgaatc |
42340659 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaaccca |
198 |
Q |
| |
|
||||| ||||| ||||||||||| | || ||||||||||||| ||||| |||||||||| | ||||| |||||||||||||| |||||| |||| |
|
|
| T |
42340660 |
tcttgccattgttgtcatgcatccattgttgtccttccaatgcttgttcaagtatgatgggcatcattccaaatgacatcattgcgtgcagccca |
42340754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 55199412 - 55199358
Alignment:
| Q |
5 |
tcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctatt |
59 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||| ||||| || |||| |
|
|
| T |
55199412 |
tcaaccacatctcacgcggtttctcccaaactgagttgttagcttgcactttatt |
55199358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 40589000 - 40589234
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||||||||||||| ||||| |||| ||||| |||||||| |||| ||||||||| | ||||| |||| | |
|
|
| T |
40589000 |
ttcaaccacgtctcactcggtttctcccaaactgagttgttaccttgcactctgttatgcccgtgttgcacaaccggtggtgagggctgttt-atgaacc |
40589098 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
||||| ||||| || ||||||||||||| ||||| |||||| ||||||||||||||||| | ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40589099 |
tcttgccattgttgccatgcatctagtgtcgtcctcccaatgcttgttgaagtatgatgagcatcattccaaatgacatcattacgtgcaacccaaattt |
40589198 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
||||||||||||||| |||||||||| ||| ||||| |
|
|
| T |
40589199 |
gccaaagaagtaaagccacccgaccagcaacgtctc |
40589234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 7127125 - 7126891
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||||||||| | ||| |||||| ||||| |||||||| ||||| | ||||| || | |||||| |||| |||| |||| | ||||| |||| | |
|
|
| T |
7127125 |
ttcaaccatgtctcgctcggcttctcccaaactaagttgttaccttgccccctattctggctgtgttgcacaaccggtagtgagggatgttt-atgaacc |
7127027 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
|| || |||||||| |||||||| || | ||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
7127026 |
tcatgccattgctgccatgcatccagagctgtccttccaatgcttgttgaagtatgatgagtgtcattccaaatgacatcattacgtgcagcccaaattt |
7126927 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||| |
|
|
| T |
7126926 |
gccaaagaagtaaaaccacccgaccatcaatgtctc |
7126891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 22 - 239
Target Start/End: Original strand, 478359 - 478575
Alignment:
| Q |
22 |
ggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattctcttgtcattgctgtcat |
121 |
Q |
| |
|
||||||||| ||| |||| ||||| |||| ||||||| || | |||||| |||| | ||||||| | ||||| |||| |||||| |||||||| ||| |
|
|
| T |
478359 |
ggtttctcccaaattgagatgttaccttggactctattttgcctgtgttgcacaaccactggtgatggatgttt-atgaacctcttgccattgctgccat |
478457 |
T |
|
| Q |
122 |
gcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattggccaaagaagtaaagtca |
221 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||| ||| ||||||||| || |
|
|
| T |
478458 |
gcatctagtgccgtccttccaatgcttgttgaagtatgatgagcgtcattccaaatgatatcattacgtgcaacccaaattttccagtgaagtaaagcca |
478557 |
T |
|
| Q |
222 |
cccgaccaacaatgtctc |
239 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
478558 |
cccgaccagaaatgtctc |
478575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 8451408 - 8451642
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||| ||||| | |||||||||| ||| ||| | | | ||||| ||||||| || |||||| |||| | |||||||| | ||||| |||| | |
|
|
| T |
8451408 |
ttcaaccacgtctcgcacggtttctcccaaattgaactatgaccttgcactctattttgctggtgttgcacaacctgtggtgatggctgttt-atgaacc |
8451506 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
||||| ||||| || ||||| ||||||| ||| |||| ||| |||||||||||||||||| ||||| ||||| ||||||||||||||| |||||||| |
|
|
| T |
8451507 |
tcttgccattgttgccatgcctctagtgctgttcttctgatgcctgttgaagtatgatgaacatcattccaaataacatcattacgtgcagcccaaattt |
8451606 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
||||||||||||||| |||||||||| ||| ||||| |
|
|
| T |
8451607 |
gccaaagaagtaaagccacccgaccagcaacgtctc |
8451642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 43318443 - 43318547
Alignment:
| Q |
135 |
tccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattggccaaagaagtaaagtcacccgaccaacaat |
234 |
Q |
| |
|
||||||||||| || |||||||||||||| | ||||||||||||| |||||||| |||| | |||||| |||||||||||||| |||||||||| ||| |
|
|
| T |
43318443 |
tccttccaatgcttcttgaagtatgatgagcatcatttcaaatgatatcattacttgcagcacaaatttgccaaagaagtaaaaccacccgaccagaaat |
43318542 |
T |
|
| Q |
235 |
gtctc |
239 |
Q |
| |
|
||||| |
|
|
| T |
43318543 |
gtctc |
43318547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 42899007 - 42898946
Alignment:
| Q |
110 |
cattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatt |
171 |
Q |
| |
|
|||||||| ||||||||||||| ||||| |||||| | ||||| ||||||||||||||||| |
|
|
| T |
42899007 |
cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtcatt |
42898946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 16)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 51259812 - 51260049
Alignment:
| Q |
1 |
cagttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatga |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||| ||||| ||||||| || |||||||| ||| || || ||| ||||||| |||| |
|
|
| T |
51259812 |
cagttcaaccacgtctcacgcggtttctcccaaactgagttgttagcttgcactctattctgcccgtgttgcgcaatcgatgatgagggttgttt-atga |
51259910 |
T |
|
| Q |
101 |
ttctcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaa |
200 |
Q |
| |
|
||| || |||||||| ||||||||||||| |||||| |||||| |||||||||| |||||| ||||||| ||||||||||| ||||||||| |||||| |
|
|
| T |
51259911 |
acctcctgccattgctgccatgcatctagtgttgtcctcccaatgcttgttgaagtgtgatgagcgtcattccaaatgacatctttacgtgcagcccaaa |
51260010 |
T |
|
| Q |
201 |
ttggccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
51260011 |
tttgccaaagaagtaaagccacccgaccaacagtgtctc |
51260049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 28538070 - 28538304
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||| ||||| |||||||||| ||||||| |||||| ||||| ||||| | || ||||||||||||| ||||||||| | ||||| |||| | |
|
|
| T |
28538070 |
ttcaaccacgtctcgttcggtttctcccaaactgaattgttaccttgcactctactgtgcccgtgttgtacaatcggtggtgagtggtgttt-atgaacc |
28538168 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
||||| ||||| || ||||||||||||| ||||||||| ||| | ||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
28538169 |
tcttgccattgttgacatgcatctagtgttgtccttcccatgctcgttgaagtatgatgagcgtcattccaaatgacatcattacgtgcagcccaaattt |
28538268 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
|||||||||||| || |||||||||| |||| |||| |
|
|
| T |
28538269 |
gccaaagaagtacagccacccgaccagcaatatctc |
28538304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 56065531 - 56065297
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||| ||||||| | |||||||| |||||||||||||| ||||| ||||||| || |||||||| |||| || || || ||||||| |||| | |
|
|
| T |
56065531 |
ttcaaccacgtctcacacagtttctcccaaactgagttgttagcttgcactctattctgcccgtgttgcacaatcgatgacgagggttgttt-atgaacc |
56065433 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
|| || |||||||| ||||||||||||| |||||| |||||| |||||||||| |||||| ||||||| ||||||||||||||||| ||| |||||||| |
|
|
| T |
56065432 |
tcctgccattgctgccatgcatctagtgttgtcctcccaatgcttgttgaagtgtgatgagcgtcattccaaatgacatcattacgggcagcccaaattt |
56065333 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||| |
|
|
| T |
56065332 |
gccaaagaagtaaaaacacccgaccaacagtgtctc |
56065297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 2064736 - 2064522
Alignment:
| Q |
23 |
gtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattctcttgtcattgctgtcatg |
122 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||||| ||||||||||| |||| || |||||| ||||||| | || |||||| ||||| ||||||| |
|
|
| T |
2064736 |
gtttctcccaaactgagttgttaccttgcactctattttgtccgtgttgcacaaccgatggtgaaggttgttt-acgaacctcttgccattgttgtcatg |
2064638 |
T |
|
| Q |
123 |
catctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattggccaaagaagtaaagtcac |
222 |
Q |
| |
|
|||||| |||||||| |||||| | |||||||||||||| ||||||| ||||||||||||||||||||| |||||||| |||||| ||||||| ||| |
|
|
| T |
2064637 |
catctaaagatgtcctcccaatgctcattgaagtatgatgagcgtcattccaaatgacatcattacgtgcagcccaaatttgccaaaaaagtaaaaccac |
2064538 |
T |
|
| Q |
223 |
ccgaccaacaatgtct |
238 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
2064537 |
ccgaccatcaatgtct |
2064522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 29655950 - 29656184
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||||||||||| |||||||| | |||||||| | ||| ||||| ||||||||| || ||||| ||| |||||||||| ||||| |||| | |
|
|
| T |
29655950 |
ttcaaccatgtctcactcggtttcttccaaactgagatattaccttgcattctattatgcccatgttgcacacccggtggtgatgaatgttt-atgaacc |
29656048 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||||||||||||| || |||||||||||||| |||||| |||| |||||||||| |||| |||||||| |
|
|
| T |
29656049 |
tctttccattgctgccatgcatctagtgttgtccttccaatgctttttgaagtatgatgactgtcattccaaacgacatcattatgtgctgcccaaattt |
29656148 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
|||||| || ||||| ||| ||| |||||||||||| |
|
|
| T |
29656149 |
gccaaataaataaagccacgcgagcaacaatgtctc |
29656184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 32577332 - 32577553
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||||||||| | |||||||||| |||||||||||||| ||||| || |||| || |||||||| |||| |||| |||| | ||||| |||| | |
|
|
| T |
32577332 |
ttcaaccatgtctc-ctcggtttctcccaaactgagttgttaccttgcactatattctggccgtgttgcacaaacggtagtgacggatgttt-atgaacc |
32577429 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
||||| |||||| | |||||||||| || ||||||||||||| | |||||||||||| | ||||||| ||||||||||||||||| ||| || ||||| |
|
|
| T |
32577430 |
tcttgccattgccgccatgcatctaatgttgtccttccaatgccttttgaagtatgataagcgtcattccaaatgacatcattacgagcagcctaaattt |
32577529 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgac |
227 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
32577530 |
tccaaagaagtaaagtcactcgac |
32577553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 55734911 - 55734677
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||| |||| | |||||||||| |||| ||||||||| ||||| ||||||| |||| || ||| |||| || || |||| ||||||| |||| |
|
|
| T |
55734911 |
ttcaaccacatctcgctcggtttctcccaaaccgagttgttaccttgcactctattttgtctgtattgcacaaccgatgatgatggttgttt-atgaaca |
55734813 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
||||| ||||| || ||| ||||||||| |||||| |||||| | |||||||||||||| ||||||| |||||| ||||||||||||| |||||||| |
|
|
| T |
55734812 |
tcttgccattgttgccatacatctagtgttgtcctcccaatgctcattgaagtatgatgagcgtcattctaaatgatatcattacgtgcagcccaaattt |
55734713 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
||||||||||||||| |||||||||| |||| |||| |
|
|
| T |
55734712 |
gccaaagaagtaaagccacccgaccagcaatatctc |
55734677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 49119672 - 49119899
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||| ||||||||| | ||||| ||| |||||| ||||||| ||| | ||||||| || |||||| | |||| | | ||||| | ||||| |||| | |
|
|
| T |
49119672 |
ttcagccatgtctcgcttggtttatcccaaactgggttgttaccttacactctattctggccgtgtggcacaaccaatagtgatggatgttt-atgaacc |
49119770 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
||||| |||||||| |||||||||| || |||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| ||| || ||||| |
|
|
| T |
49119771 |
tcttgccattgctgccatgcatctaatgctgtccttccaatgacttttgaagtatgatgaacgtcattccaaatgacatcattacgagcagcctaaattt |
49119870 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaaca |
232 |
Q |
| |
|
|||||||||| |||| ||| ||||||||| |
|
|
| T |
49119871 |
gccaaagaaggaaagccactcgaccaaca |
49119899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 49951215 - 49950991
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||||||||| | |||||||||| |||||||||||||| ||||| |||||||||| | |||||| |||| |||||||| |||| ||||||| | |
|
|
| T |
49951215 |
ttcaaccatgtctcgctcggtttctccaaaactgagttgttaccttgcactctattatgcctgtgttgcacaactggtggtgagcgttg-tttatgaacc |
49951117 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
||||| ||||| || ||||| ||||||| ||||||| ||||| | ||||||||||||||| ||||||| ||||||| |||||| |||||| |
|
|
| T |
49951116 |
tcttgccattgttgccatgcttctagtgttgtcctttcaatgctcgttgaagtatgatgagcgtcatt----------tcattacatgcaactcaaattt |
49951027 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
||||||||||||||| | |||||||| ||||||||| |
|
|
| T |
49951026 |
gccaaagaagtaaagccgcccgaccagcaatgtctc |
49950991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 94 - 232
Target Start/End: Complemental strand, 28426008 - 28425870
Alignment:
| Q |
94 |
tttatgattctcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgca |
193 |
Q |
| |
|
||||||| |||||| |||||||| |||||||||| || |||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
28426008 |
tttatgaacctcttgccattgctgccatgcatctaatgctgtccttccaatgacttttgaagtatgatgaacgtcattccaaatgacatcattacgagca |
28425909 |
T |
|
| Q |
194 |
acccaaattggccaaagaagtaaagtcacccgaccaaca |
232 |
Q |
| |
|
|| ||||| |||||||||| |||| ||| ||||||||| |
|
|
| T |
28425908 |
gcctaaatttgccaaagaaggaaagccactcgaccaaca |
28425870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 18442430 - 18442663
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||| ||||| | |||||||||| |||| ||||||||| ||||| ||||||| |||| || ||| |||| ||||| ||| ||||||| |||| |
|
|
| T |
18442430 |
ttcaaccacgtctcgctcggtttctcccaaacagagttgttaccttgcactctattttgtctgtattgcacaaccggtgatgag-gttgttt-atgaaca |
18442527 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
||||| ||||| || ||||||| ||||| |||||| |||||| | || ||||||||||| ||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
18442528 |
tcttgccattgttgccatgcatatagtgttgtcctcccaatgctcattaaagtatgatgagcgtcattccaaatgacatcattacgtgtagcccaaattt |
18442627 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
|||||||||||||| |||| ||||| |||| |||| |
|
|
| T |
18442628 |
tccaaagaagtaaagccacctgaccagcaatatctc |
18442663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 238
Target Start/End: Original strand, 51735346 - 51735490
Alignment:
| Q |
94 |
tttatgattctcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgca |
193 |
Q |
| |
|
||||||| |||||| |||||||| | ||||||||| | ||||||||||| ||||||||||||||||| | ||||| ||||||||||||||| ||||| |
|
|
| T |
51735346 |
tttatgaacctcttgccattgctgctagacatctagtgttatccttccaatgcttgttgaagtatgatgagcatcattccaaatgacatcattatgtgca |
51735445 |
T |
|
| Q |
194 |
acccaaattggccaaagaagtaaagtcacccgaccaacaatgtct |
238 |
Q |
| |
|
| |||||| | ||||||||||||| ||||| |||| |||||||| |
|
|
| T |
51735446 |
gctcaaatttgtcaaagaagtaaagccacccaaccagcaatgtct |
51735490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 110 - 239
Target Start/End: Original strand, 37246246 - 37246376
Alignment:
| Q |
110 |
cattgctgtcatgcatctagtgatgtccttccaatgattgttgaag-tatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattggccaa |
208 |
Q |
| |
|
|||||||| |||||||| || | ||||||||||||| ||||||||| ||| |||| |||| || |||||||||||||||| |||| |||||||| |||| |
|
|
| T |
37246246 |
cattgctgccatgcatccagagctgtccttccaatgcttgttgaaggtataatgagcgtccttccaaatgacatcattacatgcagcccaaattttccaa |
37246345 |
T |
|
| Q |
209 |
agaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
|||||||||| ||| |||||| ||||||||| |
|
|
| T |
37246346 |
agaagtaaagccacacgaccagcaatgtctc |
37246376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 43840592 - 43840718
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||| ||||| ||||| ||||| ||||| ||||||| |||||| |||||||||| |||||| | || ||||||||| | | |||||||| || |
|
|
| T |
43840592 |
ttcaaccacgtctcgtgcggtctctcccaaactaagttgttgtcttgcactctattatgctagtgttgcataatcggtggtgagggct-ttttatgaatc |
43840690 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtg |
131 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
43840691 |
tcttgtcattgttgtcatgcatctagtg |
43840718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 43840717 - 43840790
Alignment:
| Q |
148 |
tgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattggccaaagaagtaaagtca |
221 |
Q |
| |
|
||||||||| ||||| |||||||| ||||||||||||| |||||||| |||||| | |||||||||||||||| |
|
|
| T |
43840717 |
tgttgaagtgtgatgtgcgtcattttaaatgacatcattgcgtgcaactcaaatttgtcaaagaagtaaagtca |
43840790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 163
Target Start/End: Complemental strand, 21321409 - 21321271
Alignment:
| Q |
24 |
tttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattctcttgtcattgctgtcatgc |
123 |
Q |
| |
|
||||||| |||||| |||||| ||||| |||||||||| |||||||||||| |||| |||| | || ||||||| ||||| |||||||| || || |
|
|
| T |
21321409 |
tttctcccaaactgtgttgttgccttgcactctattatgctcgtgttgtacaaccggtagtgagggatg-tttatgaacatcttgccattgctgccaagc |
21321311 |
T |
|
| Q |
124 |
atctagtgatgtccttccaatgattgttgaagtatgatga |
163 |
Q |
| |
|
|||||||| |||||| |||||| | ||||| ||||||||| |
|
|
| T |
21321310 |
atctagtgctgtcctcccaatgctcgttgatgtatgatga |
21321271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 7 - 239
Target Start/End: Complemental strand, 51113214 - 51112983
Alignment:
| Q |
7 |
aaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattctct |
106 |
Q |
| |
|
||||| ||||||| || ||||||| |||||||||||||| ||||| ||||||| || |||||||| |||| || || ||| | ||||| |||| ||| |
|
|
| T |
51113214 |
aaccacgtctcacacgatttctcccaaactgagttgttagcttgcactctattctgcccgtgttgcacaatcgatgatgagggctgttt-atgaacctcc |
51113116 |
T |
|
| Q |
107 |
tgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattggcc |
206 |
Q |
| |
|
|| |||||||| ||||||||||||| |||||| || ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
51113115 |
tgccattgctgccatgcatctagtgctgtcctcccgatgcttgttgaagtgtgatgaacgtcatttcaaatgacatcattacgtgcaacccaaatttgcc |
51113016 |
T |
|
| Q |
207 |
aaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
|||||||||||| |||||||||| || |||||| |
|
|
| T |
51113015 |
aaagaagtaaagccacccgaccagcagtgtctc |
51112983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 36733596 - 36733361
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||| |||| ||| ||||| |||||| || || ||||| |||| |||| |||| | ||||||| | |
|
|
| T |
36733596 |
ttcaaccatgtctcgctcggtttctccgaaactcagttattaccttgcattctattttggccttgttgcacaaccggtagtgaggggatgtttatgaacc |
36733497 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
||||| |||||||| ||||||||||||| ||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
36733496 |
tcttgccattgctgccatgcatctagtgttgtccttccgatgtttgttgaagtatgatgaacgtcattccaaatgacatcattacgtgcagcccaaattt |
36733397 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
36733396 |
gccaaagaagtaaagccacccgaccagcaatgtctc |
36733361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 218
Target Start/End: Complemental strand, 44527124 - 44526954
Alignment:
| Q |
47 |
cttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattctcttgtcattgctgtcatgcatctagtgatgtccttccaatga |
146 |
Q |
| |
|
||||| |||||||||| |||||||| |||| || |||| | | | |||||||| |||||| ||||| || ||||||||||||| |||||| |||||| |
|
|
| T |
44527124 |
cttgcactctattatgcccgtgttgcacaaccgatggtaa-actatttttatgaacctcttgccattgttgccatgcatctagtgttgtcctcccaatgc |
44527026 |
T |
|
| Q |
147 |
ttgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattggccaaagaagtaaag |
218 |
Q |
| |
|
| |||||||| |||||| | ||||| ||||||||||||||||||||| ||||||| ||||||||| ||||| |
|
|
| T |
44527025 |
tcgttgaagtgtgatgagcatcattccaaatgacatcattacgtgcagtccaaatttgccaaagaaataaag |
44526954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 5609241 - 5609007
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||| ||||| | |||||||||| ||||||||||||| ||||| |||||||||| | |||||||| | || | ||| | |||| |||| | |
|
|
| T |
5609241 |
ttcaaccacgtctcgctcggtttctcccaaactgagttgttgccttgcactctattatgcctgtgttgtattaccgatagtggaggccgttt-atgaacc |
5609143 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
||||| ||||||| ||||||||||||| ||||| |||||| | ||| ||||||||| | | ||| ||||| |||||| | |||| |||||||| |
|
|
| T |
5609142 |
tcttgccattgctaccatgcatctagtgtcgtcctcccaatgctcaatgatgtatgatgagcataattccaaatagtatcattgcatgcagcccaaattt |
5609043 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5609042 |
gccaaagaagtaaagccacccgaccaacaatgtctc |
5609007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 48950009 - 48950081
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaa |
76 |
Q |
| |
|
|||||||| |||||||||||||||||| || ||||||||||| ||||| ||||||| || |||||||| |||| |
|
|
| T |
48950009 |
ttcaaccacgtctcacgcggtttctcccaatctgagttgttagcttgcactctattctgcccgtgttgcacaa |
48950081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 24538313 - 24538260
Alignment:
| Q |
103 |
ctcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagt |
156 |
Q |
| |
|
|||||| ||||| ||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
24538313 |
ctcttgccattgttgtcatgcatctaatgatgtccttccaatgcttgttgaagt |
24538260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 25682553 - 25682420
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| |||||| || ||||| ||||||| | || ||||| |||| ||| | | | |||| ||||||| || |
|
|
| T |
25682553 |
ttcaaccatgtctcacacggtttctcccaaattgagttcttgccttgcactctattctacccatgttgcacaatcggcgataagggttg-tttatgaatc |
25682455 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtcct |
138 |
Q |
| |
|
||||| |||||||| ||||||||||| | |||||| |
|
|
| T |
25682454 |
tcttgccattgctgccatgcatctagagttgtcct |
25682420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 4394963 - 4394903
Alignment:
| Q |
103 |
ctcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatga |
163 |
Q |
| |
|
|||||| ||||| |||||||||||||||| ||||| |||||| | ||||| ||||||||| |
|
|
| T |
4394963 |
ctcttgccattgttgtcatgcatctagtgccgtcctcccaatgctcgttgatgtatgatga |
4394903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 8387988 - 8387754
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||| |||||||||||||||||| | |||||||||||| ||||| ||||||| || |||||||| |||| || || ||| ||||||| |||| | |
|
|
| T |
8387988 |
ttcaaccacgtctcacgcggtttctcccagactgagttgttagcttgcactctattctgcccgtgttgcacaatcgatgatgagggttgttt-atgaacc |
8387890 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
|| ||||||||||| ||||||||||||| | |||| |||||| |||||||||| || ||| ||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
8387889 |
tcctgtcattgctgccatgcatctagtgttttcctcccaatgcttgttgaagtgtggtgagcgtcattccaaatgacatcattacgtgcagcccaaattt |
8387790 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||| |
|
|
| T |
8387789 |
tccaaagaagtaaagccacccgaccagcaatgtctc |
8387754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 22767542 - 22767776
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||||||||| | |||||||||| |||||||||||||| ||||| ||||||| || |||||| | |||| | || ||||| | ||||| |||| | |
|
|
| T |
22767542 |
ttcaaccatgtctcgctcggtttctcccaaactgagttgttaccttgcactctattttggccgtgtggcacaaccagtagtgatggatgttt-atgaacc |
22767640 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
||||| |||||||| |||||||||| || |||| |||||||| | |||||||||||||| ||||||| ||||||||||||||||| ||| |||||||| |
|
|
| T |
22767641 |
tcttgccattgctgccatgcatctaatgttgtcattccaatgccttttgaagtatgatgagcgtcattccaaatgacatcattacgagcagcccaaattt |
22767740 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
||||||||||||||| ||| ||||||||| |||||| |
|
|
| T |
22767741 |
gccaaagaagtaaagccactcgaccaacagtgtctc |
22767776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 30223088 - 30223318
Alignment:
| Q |
8 |
accatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattctctt |
107 |
Q |
| |
|
|||| ||||| | |||||||||| |||| ||||||||| ||||| ||||||| || |||||||| |||| | |||||| | ||||| |||| ||||| |
|
|
| T |
30223088 |
accacgtctcgcacggtttctcccaaacagagttgttaccttgcactctattctgcccgtgttgcacaactgttggtgagggctgttt-atgaacctctt |
30223186 |
T |
|
| Q |
108 |
gtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattggcca |
207 |
Q |
| |
|
||||||| |||||||||||||||| ||| |||||||| |||||||||||||||||| ||||||| ||||||| ||||||||||| |||||||| |||| |
|
|
| T |
30223187 |
gtcattgttgtcatgcatctagtgttgttcttccaataattgttgaagtatgatgagcgtcattctaaatgacttcattacgtgcttcccaaatttgcca |
30223286 |
T |
|
| Q |
208 |
aagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
|||||| |||| |||||||||| ||||||||| |
|
|
| T |
30223287 |
aagaagcaaagccacccgaccagcaatgtctc |
30223318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 27533201 - 27533426
Alignment:
| Q |
13 |
gtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattctcttgtcat |
112 |
Q |
| |
|
||||| |||| ||||||| ||||| | | ||| ||||| || |||| |||| |||||| |||| ||||||||| | ||||| |||| |||||||||| |
|
|
| T |
27533201 |
gtctcgcgcgatttctcccaaactaaactattaccttgcactatattctgtctgtgttgcacaaccggtggtgagggatgttt-atgaacctcttgtcat |
27533299 |
T |
|
| Q |
113 |
tgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattggccaaagaa |
212 |
Q |
| |
|
|| || ||||||||||||| |||| |||||||| ||||||||||||||||||||||||| ||||| |||| ||||| |||| |||||||| ||||||||| |
|
|
| T |
27533300 |
tgttgccatgcatctagtgttgtctttccaatgcttgttgaagtatgatgaacgtcattccaaataacataattacatgcagcccaaatttgccaaagaa |
27533399 |
T |
|
| Q |
213 |
gtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
||||||||||||||||| |||| |||| |
|
|
| T |
27533400 |
gtaaagtcacccgaccagcaatatctc |
27533426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 15989034 - 15989267
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||| | ||||| | |||||||||| |||||||||||||| ||||| |||||||||| ||||||| |||| || | |||| ||||||| |||| | |
|
|
| T |
15989034 |
ttcaacaacgtctcgctcggtttctcccaaactgagttgttaccttgcactctattatgctcgtgttgcacaaccgctagtgaaggttgttt-atgaacc |
15989132 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
||||| ||||| || |||||||||| || ||||| |||||| | ||||| ||||||||| ||||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
15989133 |
tcttgccattgttgccatgcatctaatgccgtcctcccaatgctcgttgatgtatgatgagtgtcattttaaatggcatcattacgtgcatcccaaattt |
15989232 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaacaatgtct |
238 |
Q |
| |
|
| |||||||||||| |||||||||| |||||||| |
|
|
| T |
15989233 |
tctaaagaagtaaagccacccgaccagcaatgtct |
15989267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 20204857 - 20204624
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||| ||| ||| | ||||||| || |||||| |||| | ||||| ||||||| |||| | |
|
|
| T |
20204857 |
ttcaaccatgtctcatttggtttctcccaaactgagttattaccttacactctattttgcttgtgttgcacaaccaagggtgagggttgttt-atgaacc |
20204759 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
||||| ||||| || ||||||||||||| |||||| |||||| | ||||||||||||||| |||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
20204758 |
tcttgccattgttgccatgcatctagtgctgtcctcccaatgctcgttgaagtatgatgagcgtcataccaa-tgacatcattacgtgcaacccaaattc |
20204660 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
| ||||||||||||| |||| ||||| ||||||||| |
|
|
| T |
20204659 |
gtcaaagaagtaaagccacctgaccagcaatgtctc |
20204624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 34653877 - 34654109
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||| ||||||| || || ||||||| || ||||||| |||| |||| ||| ||||||| |||| || |
|
|
| T |
34653877 |
ttcaaccacgtctcgtgcggtttctcccaaacttagttgttgcct-gcactctattctgcacgtgttgcacaactggtgttgagggttgttt-atgaatc |
34653974 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
| ||| ||||| || |||||||||||||||||| |||||||| ||| | ||||||||||| ||||||| |||||||||||||| |||| | || ||||| |
|
|
| T |
34653975 |
ttttgccattgttgccatgcatctagtgatgtctttccaatgcttgataaagtatgatgagcgtcattccaaatgacatcattgcgtgtagccaaaattt |
34654074 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaacaatgtct |
238 |
Q |
| |
|
| ||||||||||||| ||||| ||||||||||||| |
|
|
| T |
34654075 |
gtcaaagaagtaaagccaccctaccaacaatgtct |
34654109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 239
Target Start/End: Complemental strand, 12660203 - 12660012
Alignment:
| Q |
47 |
cttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattctcttgtcattgctgtcatgcatctagtgatgtccttccaatga |
146 |
Q |
| |
|
||||| ||||||||||||| ||||| |||| ||||||| || ||||| |||| ||||||| |||| ||| |||| |||||| | |||||| |||||| |
|
|
| T |
12660203 |
cttgcactctattatgtccatgttgcacaaccggtggtaatgcctgttt-atgaatctcttgccattactgccatgtatctagagttgtcctcccaatgc |
12660105 |
T |
|
| Q |
147 |
ttgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattggccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
|| |||||||||||||| | ||||| |||||||||||||||||||||||||||||| ||||| | | |||| |||||||||| ||||||||| |
|
|
| T |
12660104 |
ttcttgaagtatgatgagcttcattccaaatgacatcattacgtgcaacccaaatttaccaaatatggaaagccacccgaccagcaatgtctc |
12660012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 41941022 - 41941254
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||| |||| | |||||||||| ||| || |||| || ||||| ||||||| || |||||||| |||| |||||| || ||||||| |||| | |
|
|
| T |
41941022 |
ttcaaccacatctcgctcggtttctcccaaattgggttgataccttgcactctattctgcccgtgttgcacaaccggtggcgagggttgttt-atgaacc |
41941120 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
||||| |||| ||||||| |||||||| ||||||||||||| |||||| |||||||| || |||| ||||||||||||||||||| | ||||||| |
|
|
| T |
41941121 |
tcttgccattattgtcatgtatctagtgttgtccttccaatgc--gttgaaatatgatgagcgacattccaaatgacatcattacgtgtagcccaaatat |
41941218 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
| |||||||||||| |||||||| || ||||||||| |
|
|
| T |
41941219 |
gtcaaagaagtaaattcacccgatcagcaatgtctc |
41941254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 195
Target Start/End: Complemental strand, 16074549 - 16074449
Alignment:
| Q |
94 |
tttatgattctcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgca |
193 |
Q |
| |
|
||||||| ||||||||||||| || || |||||||| | |||||| |||||| || |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16074549 |
tttatgaatctcttgtcattgttgccaagcatctagagctgtcct-ccaatgcttcttgaagtatgatgaacgtcattccaaatgacatcattacgtgca |
16074451 |
T |
|
| Q |
194 |
ac |
195 |
Q |
| |
|
|| |
|
|
| T |
16074450 |
ac |
16074449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 189
Target Start/End: Complemental strand, 4267970 - 4267829
Alignment:
| Q |
47 |
cttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattctcttgtcattgctgtcatgcatctagtgatgtccttccaatga |
146 |
Q |
| |
|
||||| ||||||| || |||||||| |||| || |||||| | | |||||||| |||||| |||||||| ||||||||||||| |||||| |||||| |
|
|
| T |
4267970 |
cttgcactctattctgcccgtgttgcacaaccgatggtgaacgat-ttttatgaacctcttgccattgctgccatgcatctagtgctgtcctcccaatgt |
4267872 |
T |
|
| Q |
147 |
ttgttgaagtatgatgaacgtcatttcaaatgacatcattacg |
189 |
Q |
| |
|
| |||||||| |||||| | ||||| ||||||||||||||||| |
|
|
| T |
4267871 |
tcgttgaagtgtgatgagcatcattccaaatgacatcattacg |
4267829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 239
Target Start/End: Complemental strand, 25730654 - 25730509
Alignment:
| Q |
94 |
tttatgattctcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgca |
193 |
Q |
| |
|
||||||| |||||| |||||||| ||||||| || || ||| | |||||| | ||||| ||||||||| | ||||| |||||| ||||||||||||| |
|
|
| T |
25730654 |
tttatgaacctcttggcattgctgccatgcatataatgccgtcttcccaatgctcgttgatgtatgatgagcatcattccaaatggtatcattacgtgca |
25730555 |
T |
|
| Q |
194 |
acccaaattggccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
| |||||| ||||||||||||||| || |||||| ||| ||||| |
|
|
| T |
25730554 |
gctcaaatttgccaaagaagtaaagccattcgaccagcaaagtctc |
25730509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 236
Target Start/End: Complemental strand, 27292259 - 27292114
Alignment:
| Q |
94 |
tttatgattctcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgca |
193 |
Q |
| |
|
||||||| |||||| ||||| || |||||||||||| |||||| || ||| | ||||||| |||||| | ||| | || ||||||||||||||||| |
|
|
| T |
27292259 |
tttatgaacctcttgccattgttgacatgcatctagtcctgtcctcccgatgctcattgaagtgtgatgatcatcactccagatgacatcattacgtgct |
27292160 |
T |
|
| Q |
194 |
acccaaattggccaaagaag---taaagtcacccgaccaacaatgt |
236 |
Q |
| |
|
| |||||| |||||||||| ||||| |||||||||| |||||| |
|
|
| T |
27292159 |
gctcaaatttgccaaagaagttataaagccacccgaccagcaatgt |
27292114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 16731835 - 16731601
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||||||||| | |||||||||| |||||||||||||| ||||| |||||||||| |||||| |||| |||||||| ||||||| |||| | |
|
|
| T |
16731835 |
ttcaaccatgtctcgctcggtttctcccaaactgagttgttaccttgcactctattatgcatgtgttgcacaactggtggtgagtgttgttt-atgaacc |
16731737 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
||||| ||||| || ||||| ||||||| |||||| |||||| | ||||||||| ||||| ||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
16731736 |
tcttgccattgttgccatgcttctagtgttgtcctcccaatgctcgttgaagtacgatgagcgtcattccaaatgacatcattacgtgcagtccaaattt |
16731637 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||| |
|
|
| T |
16731636 |
gcaaaagaagtaaagccacccgaccaacaatgtctc |
16731601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 17709969 - 17709735
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||||||||| | |||||||||| |||||||||||||| ||||| |||||||||| |||||| |||| |||||||| ||||||| |||| | |
|
|
| T |
17709969 |
ttcaaccatgtctcgctcggtttctcccaaactgagttgttaccttgcactctattatgcatgtgttgcacaactggtggtgagtgttgttt-atgaacc |
17709871 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
||||| ||||| || ||||| ||||||| |||||| |||||| | ||||||||| ||||| ||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
17709870 |
tcttgccattgttgccatgcttctagtgttgtcctcccaatgctcgttgaagtacgatgagcgtcattccaaatgacatcattacgtgcagtccaaattt |
17709771 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||| |
|
|
| T |
17709770 |
gcaaaagaagtaaagccacccgaccaacaatgtctc |
17709735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 29201234 - 29201470
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||||| | ||| ||||| || |||| ||||||||||| |||| || |||||| | ||||| |||| | |
|
|
| T |
29201234 |
ttcaaccacgtctcgtgcggtttctcccaaactgagctattaccttgcactgtattttgtccgtgttgcacaaccgatggtgagggctgttt-atgaacc |
29201332 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaat--gattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaat |
201 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| |||||| |||||||||||||||||||||| |||||| |
|
|
| T |
29201333 |
tcttgtcattgctgtcatgcatctagtgttgtccttccaatatgcttgttgaagtatgatgagtgtcattccaaatgacatcattacgtgcaatccaaat |
29201432 |
T |
|
| Q |
202 |
tggccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
| |||||||||||||| |||||||||| | ||||||| |
|
|
| T |
29201433 |
ttgccaaagaagtaaaaccacccgaccagccatgtctc |
29201470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 22289140 - 22288919
Alignment:
| Q |
7 |
aaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattctct |
106 |
Q |
| |
|
||||| ||||||||||| |||||| |||||||||||||| ||||| ||||||| || |||||||| |||| || || ||| ||||||| |||| ||| |
|
|
| T |
22289140 |
aaccacgtctcacgcggcttctcccaaactgagttgttagcttgcactctattctgcccgtgttgcacaaccgatgatgagggttgttt-atgaacctcc |
22289042 |
T |
|
| Q |
107 |
tgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattggcc |
206 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| |||||| |||||||||| |||||| ||| ||| ||||||||||| ||||||||| ||||||| ||| |
|
|
| T |
22289041 |
tgtcattgctgccatgcatctagtgttgtcctcccaatgcttgttgaagtgtgatgagcgtaattccaaatgacatcgttacgtgcagtccaaatttgcc |
22288942 |
T |
|
| Q |
207 |
aaagaagtaaagtcacccgacca |
229 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
22288941 |
aaagaagtaaagccacccgacca |
22288919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 9328886 - 9329120
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||||||||| | |||||||||| |||||||||||||| ||||| ||||||| | |||||| | |||| | || ||||| | ||||| |||| |
|
|
| T |
9328886 |
ttcaaccatgtctcgctcggtttctcccaaactgagttgttaccttgcactctattctagccgtgtggcacaaccagtagtgatggatgttt-atgaaca |
9328984 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
||||| |||||||| |||||||||| || ||||||||||||| | |||||||||||||| ||||| | ||||||||||||||| | ||| |||||||| |
|
|
| T |
9328985 |
tcttgccattgctgccatgcatctaatgttgtccttccaatgccttttgaagtatgatgagcgtcactccaaatgacatcattatgagcagcccaaattt |
9329084 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
|| ||||||||||||||| |||||| || |||||| |
|
|
| T |
9329085 |
gctaaagaagtaaagtcattcgaccagcagtgtctc |
9329120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 1581498 - 1581283
Alignment:
| Q |
23 |
gtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattctcttgtcattgctgtcatg |
122 |
Q |
| |
|
|||||||| |||||||||||||| |||| || || | ||| |||||||||||| || |||||| | ||||| |||| |||||| ||||| || || | |
|
|
| T |
1581498 |
gtttctcccaaactgagttgttacgttgcactatactttgttcgtgttgtacaaccgatggtgagggatgttt-atgaacctcttgccattgttgccaag |
1581400 |
T |
|
| Q |
123 |
catctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattggccaaagaagtaaagtcac |
222 |
Q |
| |
|
||||||||| || || ||||| | ||||||||||||||| ||||||| |||||||||||||| |||||| |||||||| ||||||||| ||||| ||| |
|
|
| T |
1581399 |
catctagtgtcgttctcgcaatgctcgttgaagtatgatgagcgtcattccaaatgacatcatttcgtgcagcccaaatttgccaaagaaataaagccac |
1581300 |
T |
|
| Q |
223 |
ccgaccaacaatgtctc |
239 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
1581299 |
ctgaccaacaatgtctc |
1581283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 239
Target Start/End: Complemental strand, 16098342 - 16098151
Alignment:
| Q |
47 |
cttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattctcttgtcattgctgtcatgcatctagtgatgtccttccaatga |
146 |
Q |
| |
|
||||| |||||||||| |||||||| |||| ||||||||| | ||||| | || |||||| ||||| || ||||||||||||| ||||| |||||| |
|
|
| T |
16098342 |
cttgcactctattatgcccgtgttgcacaaccggtggtgaatgatgttt-aggaacctcttgccattgatgccatgcatctagtgcagtcctcccaatgt |
16098244 |
T |
|
| Q |
147 |
ttgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattggccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
| ||||||| ||| | | ||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16098243 |
tcattgaagtgtgacaagcatcattccaaatgacatcattacgtgcagcccaaatttgccaaagaagtaaagtcacccgaccagcaatgtctc |
16098151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 224
Target Start/End: Original strand, 11745954 - 11746145
Alignment:
| Q |
32 |
aaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattctcttgtcattgctgtcatgcatctagtg |
131 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||| |||||| |||| ||||||||| ||||||| ||| || ||| |||| |||||||||||| ||| |
|
|
| T |
11745954 |
aaactgagttgttactttgcactctattctgtctgtgttgcacaaccggtggtgagggttgttt-atgcacctgttgccattattgtcatgcatctggtg |
11746052 |
T |
|
| Q |
132 |
atgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattggccaaagaagtaaagtcaccc |
224 |
Q |
| |
|
||||| |||||| ||||||||||||||||| ||||| |||||||||| |||||||||||||||||| | |||||||||||| ||||| |
|
|
| T |
11746053 |
ccgtcctcccaatggttgttgaagtatgatgagtgtcatgccaaatgacattgttacgtgcaacccaaatttacgaaagaagtaaagccaccc |
11746145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 237
Target Start/End: Complemental strand, 17877214 - 17877083
Alignment:
| Q |
110 |
cattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacat----cattacgtgcaacccaaattggc |
205 |
Q |
| |
|
||||| || ||||||||||||| |||||| |||||| | ||||||||||||||| |||||| ||||||||| ||||||||| | |||||||| | |
|
|
| T |
17877214 |
cattgttgccatgcatctagtgctgtcctcccaatgctcgttgaagtatgatgagtgtcattctaaatgacatatatcattacgtgtagcccaaatttgt |
17877115 |
T |
|
| Q |
206 |
caaagaagtaaagtcacccgaccaacaatgtc |
237 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
17877114 |
caaagaagtaaagtcacccgaccagcaatgtc |
17877083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 34696187 - 34696421
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||| | ||| ||| |||||||| |||||||||||||| ||||| |||||||||| |||| || || || ||||||| ||||| | |||| | |
|
|
| T |
34696187 |
ttcaaccacgactcgcgcagtttctcccaaactgagttgttaccttgcattctattatgttcgtgatgcaccggcaatggtgatggttgtgt-atgaacc |
34696285 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
||||| ||||| || ||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||| |||||||| |
|
|
| T |
34696286 |
tcttgccattgttgccatgcatctagtgttgtccttccaatgcttgttgaagtatgatgaacgtcattccaaatgacatcattacttgcagcccaaattt |
34696385 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
||||||||||||||| |||||||| | ||||||||| |
|
|
| T |
34696386 |
gccaaagaagtaaagccacccgactagcaatgtctc |
34696421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 34718599 - 34718833
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||| | ||| ||| |||||||| |||||||||||||| ||||| |||||||||| |||| || || || ||||||| ||||| | |||| | |
|
|
| T |
34718599 |
ttcaaccacgactcgcgcagtttctcccaaactgagttgttaccttgcattctattatgttcgtgatgcaccggcaatggtgatggttgtgt-atgaacc |
34718697 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
||||| ||||| || ||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||| |||||||| |
|
|
| T |
34718698 |
tcttgccattgttgccatgcatctagtgttgtccttccaatgcttgttgaagtatgatgaacgtcattccaaatgacatcattacttgcagcccaaattt |
34718797 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
||||||||||||||| |||||||| | ||||||||| |
|
|
| T |
34718798 |
gccaaagaagtaaagccacccgactagcaatgtctc |
34718833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 4 - 234
Target Start/End: Original strand, 12130923 - 12131152
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtcc-gtgttgtacaagcggtggtgatagttgttttatgatt |
102 |
Q |
| |
|
|||||||| ||||| | || ||||||| ||| |||||||||| ||||| |||| || ||||| |||||| |||| |||||||||| ||||||| |||| |
|
|
| T |
12130923 |
ttcaaccacgtctcgctcgatttctcccaaattgagttgttaccttgcactctgtt-tgtcccgtgttgcacaaccggtggtgatggttgttt-atgaac |
12131020 |
T |
|
| Q |
103 |
ctcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaatt |
202 |
Q |
| |
|
|||||| ||||| || ||||||| ||||| |||||| ||||| | ||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12131021 |
ctcttgccattgttgccatgcatatagtgttgtcctcacaatgctcattgaagtatgatgtgcgtcatttcaaatgacatcattacgtgcagcccaaatt |
12131120 |
T |
|
| Q |
203 |
ggccaaagaagtaaagtcacccgaccaacaat |
234 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |
|
|
| T |
12131121 |
tgccaaagaagtaaagtcatccgaccaacaat |
12131152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 88461 - 88227
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||||||||| | |||||||||| |||||| |||||| ||||| |||||||||| |||||||||||| |||| |||| | ||||| |||| |
|
|
| T |
88461 |
ttcaaccatgtctcgctcggtttctcccaaactgtgttgttgccttgcactctattatgctcgtgttgtacaaccggtagtgagggatgttt-atgaaca |
88363 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattg |
203 |
Q |
| |
|
||||| ||||| |||||||||||||||| ||||| |||||| | ||||| |||||||| ||||||| |||||| ||||||||||||| |||||||| |
|
|
| T |
88362 |
tcttgccattgttgtcatgcatctagtgtcgtcctcccaatgctcgttgatctatgatgagcgtcattccaaatggtatcattacgtgcagcccaaattt |
88263 |
T |
|
| Q |
204 |
gccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
|||||||||| ||| |||||||||| ||||||||| |
|
|
| T |
88262 |
tccaaagaagtgaagccacccgaccagcaatgtctc |
88227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 239
Target Start/End: Original strand, 18345802 - 18345992
Alignment:
| Q |
47 |
cttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattctcttgtcattgctgtcatgcatctagtgatgtccttccaatga |
146 |
Q |
| |
|
||||| ||||||| || |||||||| |||| ||||||||| | ||||| |||| |||||| |||| ||| ||||||| ||||| |||||| ||||| |
|
|
| T |
18345802 |
cttgcactctattctgcccgtgttgcacaaccggtggtgaatgatgttt-atgaacctcttgccattactgccatgcatttagtgttgtcctcgcaatgc |
18345900 |
T |
|
| Q |
147 |
ttgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattggccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
| |||||||| |||||||| ||||| ||||||||||||||||||||| |||||||| ||||||||||||||| || ||||||| ||||||||| |
|
|
| T |
18345901 |
tcgttgaagtgtgatgaacatcattccaaatgacatcattacgtgcagcccaaatttgccaaagaagtaaagcca-ccgaccagcaatgtctc |
18345992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 110 - 239
Target Start/End: Original strand, 39826245 - 39826374
Alignment:
| Q |
110 |
cattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattggccaaa |
209 |
Q |
| |
|
|||||||| |||||||||| || ||||||||||||| | |||||||||||||| ||||||| ||||||||||||||||| ||| |||||||| |||||| |
|
|
| T |
39826245 |
cattgctgccatgcatctaatgttgtccttccaatgccttttgaagtatgatgagcgtcattccaaatgacatcattacgagcagcccaaatttgccaaa |
39826344 |
T |
|
| Q |
210 |
gaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
||||||||| ||| |||||| || |||||| |
|
|
| T |
39826345 |
gaagtaaagccactcgaccagcagtgtctc |
39826374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 30802274 - 30802489
Alignment:
| Q |
23 |
gtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattctcttgtcattgctgtcatg |
122 |
Q |
| |
|
|||| ||| ||||||||||| || ||||| ||||||| || | ||||| |||| || |||||| | ||||| |||| | |||| ||||| ||||||| |
|
|
| T |
30802274 |
gtttttcccaaactgagttggtaccttgcactctattctgcctgtgttccacaaccgttggtgagggctgttt-atgaatgtcttaccattgttgtcatg |
30802372 |
T |
|
| Q |
123 |
catctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattggccaaagaagtaaagtcac |
222 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30802373 |
catctagtgttgtccttccaatacttgttgaagtatgatgagcgtcattccaaatgacatcattacgtgcaacccaaatttgccaaagaagtaaagtcac |
30802472 |
T |
|
| Q |
223 |
ccgaccaacaatgtctc |
239 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
30802473 |
cctaccaacaatgtctc |
30802489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 23 - 238
Target Start/End: Original strand, 19364249 - 19364463
Alignment:
| Q |
23 |
gtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattctcttgtcattgctgtcatg |
122 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||| ||| || ||||||| ||| ||| |||||| ||||||| |||| |||| | ||||| ||||||| |
|
|
| T |
19364249 |
gtttctcccaaactgagttgttaccttgcactcgattttgctcgtgttgcacatgcgttggtgagggttgttt-atgaacctctcgccattgttgtcatg |
19364347 |
T |
|
| Q |
123 |
catctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattggccaaagaagtaaagtcac |
222 |
Q |
| |
|
||||||||| |||||| |||||| | |||||||||||||||||||| || |||||||||||||||||||| |||||||| || |||||| ||||| || |
|
|
| T |
19364348 |
catctagtgttgtcctcccaatgctcgttgaagtatgatgaacgtcgttcaaaatgacatcattacgtgcagcccaaatttgctaaagaaataaagccat |
19364447 |
T |
|
| Q |
223 |
ccgaccaacaatgtct |
238 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
19364448 |
ccgaccaccaatgtct |
19364463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 15606279 - 15606520
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttat-------cttgctctctattatgtccgtgttgtacaagcggtggtgatagttgtttt |
96 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||| ||||| |||||| | |||||||| | | ||||||||| ||||||| |
|
|
| T |
15606279 |
ttcaaccatgtctcgtgcggtttctcccaaactgagttgttagttgttaccttgcactctatgtttcccgtgttgcatagccggtggtgagtgttgttt- |
15606377 |
T |
|
| Q |
97 |
atgattctcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacc |
196 |
Q |
| |
|
|||| ||| || ||||| || |||| ||||||||||||||| ||||| ||||||||||||||||| ||||||| ||||| ||||||||||||||| || |
|
|
| T |
15606378 |
atgaacctcctgccattgttgccatgaatctagtgatgtcctaccaatacttgttgaagtatgatgatcgtcattccaaataacatcattacgtgcagcc |
15606477 |
T |
|
| Q |
197 |
caaattggccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
15606478 |
caaatttgccaaagaagtaaagccacccgaccagcaatgtctc |
15606520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 94 - 239
Target Start/End: Original strand, 29368410 - 29368555
Alignment:
| Q |
94 |
tttatgattctcttgtcattgctgtcatgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgca |
193 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||| |||||| |||||| | || | ||||||||||| ||||||||| |||||||||||||| || |
|
|
| T |
29368410 |
tttatgaacctcttgccattgctgtcatgcatctagtgttgtcctcccaatgctcattcaggtatgatgaacatcatttcaagtgacatcattacgtcca |
29368509 |
T |
|
| Q |
194 |
acccaaattggccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
29368510 |
gcccaaatttgccaaagaagtaaagccacccgaccagcaatgtctc |
29368555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 14680061 - 14679826
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattc |
103 |
Q |
| |
|
|||||||||||||| | |||||||||| |||||||||||||| ||||| |||||||||| ||||||| |||| ||||||| ||||| ||||||| | |
|
|
| T |
14680061 |
ttcaaccatgtctcgctcggtttctcccaaactgagttgttaccttgcactctattatgctcgtgttgcacaactagtggtgagagttg-tttatgaacc |
14679963 |
T |
|
| Q |
104 |
tcttgtcattgctgtcatgcatctagtgatgtccttccaatgattg-ttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaatt |
202 |
Q |
| |
|
|||| ||||| | ||||||||||||| |||||| ||||| | | || |||||||||| | ||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
14679962 |
tctttccattgtggccatgcatctagtgttgtcctctcaatgctcgtttttagtatgatgatcatcattccaaatgacatcattacgtgcaggccaaatt |
14679863 |
T |
|
| Q |
203 |
ggccaaagaagtaaagtcacccgaccaacaatgtctc |
239 |
Q |
| |
|
| |||||||||||| |||||||||| | ||||||| |
|
|
| T |
14679862 |
tgtaaaagaagtaaagccacccgaccagctatgtctc |
14679826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 119 - 239
Target Start/End: Original strand, 11732049 - 11732169
Alignment:
| Q |
119 |
catgcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaattggccaaagaagtaaag |
218 |
Q |
| |
|
|||||||||| || |||||| |||||| | |||||||||| ||||||||||| | ||||||||||||||||||| | |||||| | |||||||||||| |
|
|
| T |
11732049 |
catgcatctattgttgtcctcccaatgctcattgaagtatgttgaacgtcattcccaatgacatcattacgtgcagcacaaattttcgaaagaagtaaag |
11732148 |
T |
|
| Q |
219 |
tcacccgaccaacaatgtctc |
239 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
11732149 |
ccactcgaccaacaatgtctc |
11732169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 202
Target Start/End: Complemental strand, 28107023 - 28106844
Alignment:
| Q |
22 |
ggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaagcggtggtgatagttgttttatgattctcttgtcattgctgtcat |
121 |
Q |
| |
|
||||||||| |||||||| ||||| ||||| ||||||| || |||||| |||| | |||||| || ||||| |||| |||||| ||||| || ||| |
|
|
| T |
28107023 |
ggtttctcccaaactgagatgttaccttgcactctattttgcatgtgttgcacaaccaatggtgaaagatgttt-atgaacctcttgccattgttgccat |
28106925 |
T |
|
| Q |
122 |
gcatctagtgatgtccttccaatgattgttgaagtatgatgaacgtcatttcaaatgacatcattacgtgcaacccaaatt |
202 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||| | | |||||| |||||||||||||| |||| |||||||| |
|
|
| T |
28106924 |
gcatctagtattgtccttccaatgcttgttgaagtatgataagcatcatttgaaatgacatcattatatgcagcccaaatt |
28106844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0446 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0446
Description:
Target: scaffold0446; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 88 - 16
Alignment:
| Q |
4 |
ttcaaccatgtctcacgcggtttctcctaaactgagttgttatcttgctctctattatgtccgtgttgtacaa |
76 |
Q |
| |
|
|||||||| ||||||| | |||||||| |||||||||||||| ||||| ||| || || |||||||| |||| |
|
|
| T |
88 |
ttcaaccacgtctcacacagtttctcccaaactgagttgttagcttgcagtctgttctgcccgtgttgcacaa |
16 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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