View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_high_8 (Length: 536)
Name: NF0611_high_8
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 3e-92; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 212 - 434
Target Start/End: Original strand, 13726980 - 13727204
Alignment:
| Q |
212 |
caccaacatcgagcatttcaatagaaggaagaacaacaatgccaacttggggaaannnnnnn-atattgtagcaaaagatgttcaatacaaggaggataa |
310 |
Q |
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| T |
13726980 |
caccaacatcgagcatttcaatagaaggaaggacaacaatgccaacttggggaaactttttttatattgtagcaaaagatgttcaatacaaggaggataa |
13727079 |
T |
|
| Q |
311 |
ttctcaaaaat-atggggacaagaccaagaacaggtcgccgtagcaagactatgagcaagtgtgtttgtttgttgcctaataaacttcacgttaaagcta |
409 |
Q |
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||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13727080 |
ttctcaaaaattacggtgacaagaccaagaacaggtcgccgtagcaagactatgagcaagcgtgtttgtttgttgcctaataaacttcacgttaaagcta |
13727179 |
T |
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| Q |
410 |
attcaatattaatagaagatataat |
434 |
Q |
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| T |
13727180 |
attcaatattaatagaagatataat |
13727204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 30 - 172
Target Start/End: Original strand, 13726548 - 13726690
Alignment:
| Q |
30 |
tttatatatgaagaagggtgtaaaagtaatagacataatgatattctaatcaatgaatccattgaacaaaaaagattgcaaagcatcaattgattgtgac |
129 |
Q |
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| T |
13726548 |
tttatatatgaagaagggtgtaaaagtaatagacataatgatattctaatcaatgaatgcattgaacaaaaaagatagcaaagcatcaagtgattgtgac |
13726647 |
T |
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| Q |
130 |
ctttccatgtaggatttagaccttttcctaatgtggtgtggca |
172 |
Q |
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| T |
13726648 |
ctttccatgtaggattttgaccttttcctaatgtggtgtggca |
13726690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 13728692 - 13728744
Alignment:
| Q |
484 |
ctaacagtgtgtaccaaagtatgggaatctgactcaaatatcttgttgtccca |
536 |
Q |
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| T |
13728692 |
ctaacagtgtgtaccaaagtatgggaatctgactcaaatatcttgttgtccca |
13728744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 368
Target Start/End: Complemental strand, 5542701 - 5542617
Alignment:
| Q |
284 |
aaaagatgttcaatacaaggaggataattctcaaaaatatggggacaagaccaagaacaggtcgccgtagcaagactatgagcaa |
368 |
Q |
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|||||| ||| | ||||||||||| || ||||||||| |||| ||| |||||||||| | | |||| ||||||| ||||||||| |
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| T |
5542701 |
aaaagaggtttagtacaaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaa |
5542617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 357
Target Start/End: Original strand, 49525056 - 49525120
Alignment:
| Q |
293 |
tcaatacaaggaggataattctcaaaaatatggggacaagaccaagaacaggtcgccgtagcaag |
357 |
Q |
| |
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||||||||||||||| || |||||||||||||| ||| || |||||||||| |||| ||||||| |
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|
| T |
49525056 |
tcaatacaaggaggacaaatctcaaaaatatggtgactagtccaagaacagaccgccctagcaag |
49525120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 396
Target Start/End: Original strand, 8670176 - 8670279
Alignment:
| Q |
293 |
tcaatacaaggaggataattctcaaaaatatggggacaagaccaagaacaggtcgccgtagcaagactatgagcaagtgtgtttgtttgttgcctaataa |
392 |
Q |
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|||||||||||| || || ||||||| ||| || ||| || ||||||||||| |||| ||| |||| | ||||||| ||||||||||| |||||| || |
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| T |
8670176 |
tcaatacaaggaagacaaatctcaaagatacggtgactagtccaagaacaggccgccctagtaagagtgtgagcaaccatgtttgtttgtcgcctaacaa |
8670275 |
T |
|
| Q |
393 |
actt |
396 |
Q |
| |
|
|||| |
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|
| T |
8670276 |
actt |
8670279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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