View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_11 (Length: 549)
Name: NF0611_low_11
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 8 - 520
Target Start/End: Original strand, 13306013 - 13306523
Alignment:
| Q |
8 |
ccaataatattatcattgaatttgatggtctaactcgaaattgctcaccatttaatcacgtgtgtctgatatttagcacattgagattatctagttgctc |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13306013 |
ccaacaatattatcattgaatttgatggtctaactcgaaattgctcaccatttaatcacgtgtgtctgatatttagcacattgagattatctagttgctc |
13306112 |
T |
|
| Q |
108 |
catattcttttgataactcaattcctatctaataacttttattgctcaagtatatgtttaaggattcaatttttggctcaaggcttaatcatttaaaaat |
207 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13306113 |
catattcttt-gataactcaattcctatctaataactttgattgctcaagtatatgtttaaggattcaatttttggctcaaggcttaatcatttaaaaat |
13306211 |
T |
|
| Q |
208 |
ttatgtttcacagtaccaaatttttatatatgcttaagtaaaatattgaatccataaacacataatcccttcgtcctaaaatataagtaacnnnnnnnnt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
13306212 |
ttatgtttcacagtaccaaatttttatatatgctcaagtaaaatattgaatccataaacacatactcccttcgtcctaaaatataagtaacaaaaaaaat |
13306311 |
T |
|
| Q |
308 |
cacatttattnnnnnnntaatcatccttcattatttactctaattttatcaaataaaattacaatattcttaaattacccatgcactcatcgaaaccaaa |
407 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13306312 |
cacatttattaaaaaaataatcatccttcattatttactctaattttatcaaa-aaaattacaatattcttaaattacccatgcactcatcgaaaccaaa |
13306410 |
T |
|
| Q |
408 |
acaataaattattactagcatattaaaaacatcattgtaatcccataatgtctattctccttcctagctctttgattttgcaaaactactccaacgttga |
507 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
13306411 |
acaataaattattactagcatattaaaaacatccttgtaatcccataatgtctattctccttcctagttctttgattttgcaaaactactccaacgttga |
13306510 |
T |
|
| Q |
508 |
cattccaatatta |
520 |
Q |
| |
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| T |
13306511 |
cattccaatatta |
13306523 |
T |
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