View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_14 (Length: 525)
Name: NF0611_low_14
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 10 - 459
Target Start/End: Complemental strand, 27634053 - 27633601
Alignment:
| Q |
10 |
gcacagaggaaaacaacattggagcttcatcttcaacaacacctactgaggtgttacaagaaattcctgttttcgatattcgcatgatgaatgaggttga |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27634053 |
gcacagaggaaaacaacattggagcttcatcttcaacaacacctactgaggtgtcacaagatattcctgttttcgatattcgcatgatgaatgaggttga |
27633954 |
T |
|
| Q |
110 |
cgatcacagtatttcggtggatgagaaaggttgttttgtatatttgattttaataatatttatgtatgtgtgtgattactatgttctgtatgatatatca |
209 |
Q |
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| T |
27633953 |
cgatcacagtatttcggtggatgagaaaggttgttttttatatttgattttaataatatttatgaatgtgtgtgattactatgttctgtatgatatatca |
27633854 |
T |
|
| Q |
210 |
attttgttcttcttggatgtattttatagaatagattgattatatgtcaagtcttcaatttaccttagcaatgatgtcctcctgagtatggattg---aa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
27633853 |
attttgttcttcttggatgtattttatagaatagattgattatatgtcaagtcttcaatttaccttagaaatgatgtcctcctgagtatggattgaataa |
27633754 |
T |
|
| Q |
307 |
tggaccctgaaagtttgttgttaatttggatatgatgaaggaaaagtgaggttaaaaattaaaccttttcattgttatggagtttttaaaactgaatggg |
406 |
Q |
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| T |
27633753 |
tggaccctgaaagtttgttgttaatttggatataatgaaggaaaagtgaggttaaaaattaaaccttttcattgttatggagtttttaaaactcaatggg |
27633654 |
T |
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| Q |
407 |
attattatgaaaacctttaaaccaaatcctttacaaatgtttgctgaaacaaa |
459 |
Q |
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| T |
27633653 |
attattatgaaaacctttaaaccaaatcctttacaaatgtttgctgaaacaaa |
27633601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 10 - 459
Target Start/End: Complemental strand, 34518871 - 34518422
Alignment:
| Q |
10 |
gcacagaggaaaacaacattggagcttcatcttcaacaacacctactgaggtgttacaagaaattcctgttttcgatattcgcatgatgaatgaggttga |
109 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||| | ||||| |
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| T |
34518871 |
gcacagaggacaacaacattggagcttcatcttcaacaacacctactgaggtgtcacaagatattcctgtttttgatattcgcatgatgaataaagttga |
34518772 |
T |
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| Q |
110 |
cgatcacagtatttcggtggatgagaaaggttgttttgtatatttgattttaataatatttatgtatgtgtgtgattactatgttctgtatgatatatca |
209 |
Q |
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| T |
34518771 |
cgatcacagtatttcggtggatgagaaaggttgttttttatatttgattttaataatatttatgcatgtgtgtgattactatgttctgtatgatatatca |
34518672 |
T |
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| Q |
210 |
attttgttcttcttggatgtattttatagaatagattgattatatgtcaagtcttcaatttaccttagcaatgatgtcctcctgagtatggattgaatgg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
34518671 |
attttgttcttcttggatgtattttatagaatagattgattatatgtcaagtcttcaatttaccttagaaatgatgtcctcctgagtatggattggatgg |
34518572 |
T |
|
| Q |
310 |
accctgaaagtttgttgttaatttggatatgatgaaggaaaagtgaggttaaaaattaaaccttttcattgttatggagtttttaaaactgaatgggatt |
409 |
Q |
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| T |
34518571 |
accctgaaagtttgttgttaatttggatatgatgaaggaaaagtgaggttaaaaattaaaccttttcgttgttatggagtttttaaaactgaatgggatt |
34518472 |
T |
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| Q |
410 |
attatgaaaacctttaaaccaaatcctttacaaatgtttgctgaaacaaa |
459 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34518471 |
attatgaaaaccttcaaaccaaatcctttacaaatgtttgctgaaacaaa |
34518422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 353 - 451
Target Start/End: Complemental strand, 34527555 - 34527457
Alignment:
| Q |
353 |
tgaggttaaaaattaaaccttttcattgttatggagtttttaaaactgaatgggattattatgaaaacctttaaaccaaatcctttacaaatgtttgct |
451 |
Q |
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| T |
34527555 |
tgaggttaaaaattaaacattttctttgttatggagtttttaaaactgaataggattatcatgaaaacctttaaaccaaatcctttacaaatgtttgct |
34527457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 34527656 - 34527592
Alignment:
| Q |
200 |
tgatatatcaattttgttcttcttggatgtattttatagaatagattgattatatgtcaagtctt |
264 |
Q |
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| T |
34527656 |
tgatatatcaattttattcttcttggatgtattttattgaagagattgattatatgtcaagtctt |
34527592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 184
Target Start/End: Complemental strand, 34527799 - 34527707
Alignment:
| Q |
93 |
atgatgaatgaggttgacgatcacagtatttcggtggatgagaaaggttgttttgtat-atttgattttaataatatttatgtatgtgtgtga |
184 |
Q |
| |
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|||| |||||||||||| |||||||||||||| | |||||||||||||||||| | | |||||||||||||||| ||| | ||||||||||| |
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| T |
34527799 |
atgacgaatgaggttgatgatcacagtatttctggagatgagaaaggttgttttttttaatttgattttaataatctttctttatgtgtgtga |
34527707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 459
Target Start/End: Complemental strand, 27618143 - 27618062
Alignment:
| Q |
378 |
ttgttatggagtttttaaaactgaatgggattattatgaaaacctttaaaccaaatcctttacaaatgtttgctgaaacaaa |
459 |
Q |
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|||||||||||||||| ||||||| | |||||| |||||| ||| |||||||||| |||| ||||| |||||||||||||| |
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| T |
27618143 |
ttgttatggagttttttaaactgattaagattatcatgaaagcctctaaaccaaattcttttcaaatctttgctgaaacaaa |
27618062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 459
Target Start/End: Complemental strand, 34506939 - 34506858
Alignment:
| Q |
378 |
ttgttatggagtttttaaaactgaatgggattattatgaaaacctttaaaccaaatcctttacaaatgtttgctgaaacaaa |
459 |
Q |
| |
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| T |
34506939 |
ttgttatggagttttttaaactgattaagattatcatgaaagcctctaaaccaaactcttttcaaatctttgttgaaacaaa |
34506858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 34527969 - 34527920
Alignment:
| Q |
10 |
gcacagaggaaaacaacattggagcttcatcttcaacaacacctactgaggtg |
62 |
Q |
| |
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| T |
34527969 |
gcacagaggaaaacaactt--gag-ttcatcttcaacaacacctactgaggtg |
34527920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 34371117 - 34371169
Alignment:
| Q |
10 |
gcacagaggaaaacaacattggagcttcatcttcaacaacacctactgaggtg |
62 |
Q |
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||||||||||||| ||||| |||||||||| |||||| |||| ||||||||| |
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| T |
34371117 |
gcacagaggaaaataacatgagagcttcatcatcaacagcaccaactgaggtg |
34371169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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