View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0611_low_15 (Length: 508)
Name: NF0611_low_15
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 30 - 499
Target Start/End: Complemental strand, 53459698 - 53459228
Alignment:
| Q |
30 |
gtttgaagctaaaaccgatgtgactaacagatttaaggagtgcatcaaccataaaatcgaagtccattttcctatagaaaaatacttttactctaaacgt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
53459698 |
gtttgaagctaaaaccgatgtgactaacagatttaaggagtgcatcaaccataaaatcgaagtccattttcctatagaaaaatacttttactctaaactt |
53459599 |
T |
|
| Q |
130 |
actttgccaactttaaacctgaaatgcccaaacatgcaattaatagtactcacaaagagctgacaaaaagattagcattacatgttctgccaattaccaa |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53459598 |
actttgccaactttaaacctgaaatgcccaaacatgcaattaatagtactcacaaagagctgacaaaaagattagcattacatgttctgccaattaccaa |
53459499 |
T |
|
| Q |
230 |
ttagtgaatcccctaacaagcatggggaggaataggcctattgaatcacaggattatccctacaaatcatttttaatcacataattaaagaaaccgcatg |
329 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53459498 |
ttagtgaatcccctaacaagcagggagaggaataggcctattgagtcacaggattatccctacaaatcatttttaatcacataattaaagaaaccgcatg |
53459399 |
T |
|
| Q |
330 |
ggttgat-caatatgcacataaaatacacattgcagagaaagaatttgcacccacagaaacagatattgcacataacacacacaatagtacttctactgt |
428 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
53459398 |
ggttgatccaatatgcacataaaatacacattgcagagaaagaatttgcacccacagaaacagatattgcacataacacacacaatagtacttctattgt |
53459299 |
T |
|
| Q |
429 |
tttgggaatatattttgtctccatgcatacaattgcattttcatatgaagttggtgtaattgtattcatct |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53459298 |
tttgggaatatattttgtctccatgcatacaattgcattttcatatgaagttggtgtaattgtattcatct |
53459228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2422 times since January 2019
Visitors: 3819