View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_17 (Length: 502)
Name: NF0611_low_17
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 46 - 385
Target Start/End: Original strand, 5262720 - 5263058
Alignment:
| Q |
46 |
atgaagtcatgaacaatgagttgaacaagcaaagagtaattaaagtccaaaccccaagtgaaaagcaagccatcagaggctatcgcagctgtatgctccc |
145 |
Q |
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| T |
5262720 |
atgaagtcatgaacaatgagtaaaacaagcaaagagtaagagaagtccaaaccccaagtgaaaagcaagccatcagaggctattgcagctgtatgctccc |
5262819 |
T |
|
| Q |
146 |
gaccgcatgcaatatccaaccagcgtgtattgagaccagccggacatccaaacagctgaggaggtagctgttttggaatccttaactgatcgtctttctc |
245 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5262820 |
gaccacatgcaatatccaaccagcgtgtattgagaccagccggacatccaaacagctgaggaggtagctgttttggaatccttaactgatcgtctttctc |
5262919 |
T |
|
| Q |
246 |
ctttctccctgtctgcccggattgattatacccccacacataaatagcactcttccttggtatactcgctgccacgggttttgtggtccccaaaattgca |
345 |
Q |
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| T |
5262920 |
ctttctccctgtctgcccggattgattatacccccacacataaatagcactcttccttggtatactcgctgccacgggttttgtggtccccaaaattgca |
5263019 |
T |
|
| Q |
346 |
tcaatatccatagattgtttaccttgagatgcaaaatcca |
385 |
Q |
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| T |
5263020 |
tcaatatccatagatt-ataaccttgagatgcaaaatcca |
5263058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 339 - 467
Target Start/End: Original strand, 5263101 - 5263230
Alignment:
| Q |
339 |
aattgcatcaatatccatagattgtttaccttgagatgcaaaatccatta-gttcaaattctaaacttcaatcaatgataataaaaaggaaagttttctc |
437 |
Q |
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||||||||||| ||||||||||| || || || ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
5263101 |
aattgcatcaacatccatagattattgacgttaagatgcaaaatccattaagttcaaattctaaacttcgatcaatgataataaaaaggaaaattttctc |
5263200 |
T |
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| Q |
438 |
tcatgatccagtaacttaatttcaggtagc |
467 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
5263201 |
tcatgatccagtaacttaatttcaggtagc |
5263230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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