View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_21 (Length: 465)
Name: NF0611_low_21
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 99 - 391
Target Start/End: Original strand, 39984261 - 39984553
Alignment:
| Q |
99 |
caacttgttccaaatgaccttgtggaaaataaactacaacattccctttctttggaagtgatgttaaaggtccagcacaagcatgccatagttcaagata |
198 |
Q |
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| T |
39984261 |
caacttgttccaaatgaccttgtggaaaataaactacaacattccctttctttggaagtgatgttaaaggtccagcacaagcatgccatagttcaagata |
39984360 |
T |
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| Q |
199 |
agatgaagacacaatagctgaagtggaactagaagatgaacatgttggtgatgatatagaagataaagtgcaaacacaacaaacacttttctcacattta |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39984361 |
agatgaagacacaatagctgaagtggaactagaagatgaacatgttggtgatgaagaagaagataaagtgcaaacacaacaaacacttttctcacattta |
39984460 |
T |
|
| Q |
299 |
ccattgctacacacattcttcttaacttcagttatggaatcattcagatcaatttccatgaacacctacaatgttttgtggttggttcatctc |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39984461 |
ccattgctacacacattcttcttaacttcagttatggaatcattcagatcaatttccatgaacacctacaatgttttgtggttggttcttctc |
39984553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 103 - 245
Target Start/End: Complemental strand, 22234681 - 22234539
Alignment:
| Q |
103 |
ttgttccaaatgaccttgtggaaaataaactacaacattccctttctttggaagtgatgttaaaggtccagcacaagcatgccatagttcaagataagat |
202 |
Q |
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||||||||| ||||||||||||||||| || |||||||| |||||||| |||||||| || | ||| ||||||||||||||||||| |||||||||||| |
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| T |
22234681 |
ttgttccaagtgaccttgtggaaaatacaccacaacatttcctttcttaggaagtgaggtaagaggaccagcacaagcatgccataattcaagataagaa |
22234582 |
T |
|
| Q |
203 |
gaagacacaatagctgaagtggaactagaagatgaacatgttg |
245 |
Q |
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| T |
22234581 |
gaagaaacaagtggtgaagttgaacttgaagatgaacaagttg |
22234539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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