View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0611_low_23 (Length: 455)
Name: NF0611_low_23
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 1616222 - 1616598
Alignment:
| Q |
1 |
tgccctcatatttagtatttatgaatttatttatcggaaagtccctaaaggactcgttgatttgattatttatgatgaatgatacgtttttattgaatta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1616222 |
tgccctcatatttagtatttatgaatttatttatcggaaagtccctaaaggactcattgatttgattatttatgatgaatgatacgtttttattgaatta |
1616321 |
T |
|
| Q |
101 |
cttaatgcttaattaaaaaattccttttcagaaaaagaaagaagtgccgaattttagaaatctccccttatacaagggatttgattgataagaattaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1616322 |
cttaatgcttaattaaaaaattccttttcagaaaaagaaagaagtgccgaattttagaaatctccccttatacaagggatttgattgataagaattaatg |
1616421 |
T |
|
| Q |
201 |
caccaaactttacttgatgcataa-nnnnnnnnnnnnnagggaacttaatacat--atttttaagatttggcctcaaaatacttataaaatacaacaaat |
297 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1616422 |
caccaaactttacttgatgcataattattttattttttagggaacttaatacataaatttttaagatttggcctcaaaatacttataaaatacaa----- |
1616516 |
T |
|
| Q |
298 |
taagtataagtacctctcnnnnnnnnctaatatgagtaacgtaaaacaagcgtttgtcaacatttttgtcaaataatattctt |
380 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1616517 |
taagtataagtacctctc-aaaaaaactaatatgagtaacgtaaaacaagcgtttgtcaacatttttgtcaaataatattctt |
1616598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 40050698 - 40050596
Alignment:
| Q |
16 |
tatttatgaatttatttatcggaaagtccctaaaggactcgttgatttgattatttatgatgaatgatacgtttttattgaattacttaatgcttaatta |
115 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||| || ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40050698 |
tatttatgaatttatttatcgaaaagtcgttaaaggattcattgatttgattatttatgaagaatgatacgtttttattgaattaattaatgcttaatta |
40050599 |
T |
|
| Q |
116 |
aaa |
118 |
Q |
| |
|
||| |
|
|
| T |
40050598 |
aaa |
40050596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 115 - 215
Target Start/End: Complemental strand, 40050572 - 40050472
Alignment:
| Q |
115 |
aaaaaattccttttcagaaaaagaaagaagtgccgaattttagaaatctccccttatacaagggatttgattgataagaattaatgcaccaaactttact |
214 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| |||||| |||||| |||| |||||| |
|
|
| T |
40050572 |
aaaaaattccttttcagaaaaagaaataaaaaccgaattttagaaatctcccgttatacaagggatttgattgagaagaatcaatgcatcaaaatttact |
40050473 |
T |
|
| Q |
215 |
t |
215 |
Q |
| |
|
| |
|
|
| T |
40050472 |
t |
40050472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 40050475 - 40050421
Alignment:
| Q |
243 |
acttaatacata--tttttaagatttggcctcaaaatacttataaaatacaacaa |
295 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40050475 |
acttaatacatagatttttaagatttggtctcaaaatacttataaaatacaacaa |
40050421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 380
Target Start/End: Complemental strand, 40050392 - 40050335
Alignment:
| Q |
326 |
aatatgagtaacgtaaaa---caagcgtttgtcaacatttttgtcaaataatattctt |
380 |
Q |
| |
|
||||||| |||||||||| ||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
40050392 |
aatatgaataacgtaaaagtacaagcctttgtcaacatttttgtcaaataaaattctt |
40050335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2035 times since January 2019
Visitors: 3811