View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_26 (Length: 455)
Name: NF0611_low_26
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 14 - 426
Target Start/End: Original strand, 1499361 - 1499772
Alignment:
| Q |
14 |
agagttcgaccaattgttatttcgtgttattttgagcacgaaatgctaaccttatcaaatgatacgactattgatcatagagttcggccaattgtgccta |
113 |
Q |
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| T |
1499361 |
agagttcgaccaattgttatttcgtgttattttgagcacgaaatgctaaccttatcaaatgatacgactattgatcatagagttcggcca-ttgtgccta |
1499459 |
T |
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| Q |
114 |
tatatctcacagcagagtgactgttatacttttctagtatgtagtgatttatggttacaaagtacaaaactttcttgaaatactacgatccagtttacaa |
213 |
Q |
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| T |
1499460 |
tatatctcacagcagagtgactgttatacttttctagtatgtagtgatttatggttacaaagtacaaaactttcttgaaatactacgatccagtttacaa |
1499559 |
T |
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| Q |
214 |
ctgaaccgttccacagggtttcaatctgcacccctaaccctccaaattgatacccaactaaggaacgaactcattattagcgaatatcaaccataatcaa |
313 |
Q |
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| T |
1499560 |
ctgaaccgttccacagggtttcaatctgcacccctaaccctccaaattgatacccaactaaggaacggactcattattagcgaatatcaaccataatcaa |
1499659 |
T |
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| Q |
314 |
cagggtggcagctaaataattcattcattgataaccttaatccgacaactatatggttacaaagatagaattttgtgcatgaatgaaatcaacctcatgt |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1499660 |
cagggtggcagctaaataattcattcattgataaccttaatccgacaactatacggttacaaagatagaattttgtgcatgaatgaaatcaacctcatgt |
1499759 |
T |
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| Q |
414 |
gcatgtttggttt |
426 |
Q |
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| T |
1499760 |
gtatgtttggttt |
1499772 |
T |
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