View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_29 (Length: 448)
Name: NF0611_low_29
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 30 - 441
Target Start/End: Complemental strand, 14879594 - 14879183
Alignment:
| Q |
30 |
gatgagaggtggaaaatgtgagaagtaaagagagacctatgaagtagaaaaaggaaataataggttgtaagtaataatcattgaatgaaagttgtaagaa |
129 |
Q |
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| T |
14879594 |
gatgagaggtggaaaatttgagaagtaaagagagacctaggaagtagtaaaaggaaataataggttgtaagtaataatcattgaatgaaggttgtaagaa |
14879495 |
T |
|
| Q |
130 |
tcattttagtatgtttttgatgcattttttagttcgatatatttctattttctaggtgtagtcctcaatgttgtttttggacttnnnnnnnnnnnnnnnn |
229 |
Q |
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| T |
14879494 |
tcattttagtatgtttttgatgcattttttagttcgatatatttctattttctaggtgtagtcctcaatgttgtttttggactttatatatataatatat |
14879395 |
T |
|
| Q |
230 |
gtttgtggttttatagttttgcacaatggtcattggtacaatcgtcaatgaattccttcttgttttctcagatgtttatttgaacaatttgttgactaat |
329 |
Q |
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| T |
14879394 |
gtttgtggttttatagttttgcacaatggtcattggtacaatcgtcaatgaattccttcttgttttctcagatgtttgtttgaacaagttgttgactaat |
14879295 |
T |
|
| Q |
330 |
ctttgaaccctttgagaaatattgtaattctagctagatatatatatttctttgccacttgtgttttcagatcataatttggaaaattcttaacacttgt |
429 |
Q |
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|||||||||||||||||||| |||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14879294 |
ctttgaaccctttgagaaatgttgtaattctagaaagatatgtagatttctttgccacttgtgttttcagatcataatttggaaaattcttaacacttgt |
14879195 |
T |
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| Q |
430 |
atgtctctgctc |
441 |
Q |
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|||||| ||||| |
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| T |
14879194 |
atgtctttgctc |
14879183 |
T |
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