View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_32 (Length: 433)
Name: NF0611_low_32
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 95 - 348
Target Start/End: Original strand, 8362685 - 8362936
Alignment:
| Q |
95 |
aaattatgctggtagttttgaagtatttaccaaacacttagtacataaaaggtggtcaaattttttaaattggcactcaaacttctgttcaaatatatct |
194 |
Q |
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| T |
8362685 |
aaattatgctggtagttttgaagtatttactaaacacttaggacataaaaggtggtcaaattttttaaattggcactcaaacttctgttcaaatatatct |
8362784 |
T |
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| Q |
195 |
cagtgtgagattca-tttctctattatcttcagaatgttgtccattttccttgatgtttttgcaccgctcctatatattttgattcatagaatttgttca |
293 |
Q |
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| T |
8362785 |
cagtgtgagattcattttctctattatcttcagaatgttgtccattttccttgatgtttttgcaccgctcctatatattttgattcatagaatttgttca |
8362884 |
T |
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| Q |
294 |
gatgataaaacattgcttgaacatttgataagcttggttagggtttaaatccaca |
348 |
Q |
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| T |
8362885 |
gatgataaaacattgcttgaacat---ataagcttggttagggtttaaatccaca |
8362936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 253
Target Start/End: Original strand, 8370587 - 8370726
Alignment:
| Q |
116 |
agtatttaccaaacacttagtacataaaaggtggtcaaatttttt-aaattggcactcaaacttctgttcaaatatatctcagtgtgagattca-tttct |
213 |
Q |
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||||||||||||||| || | ||| |||||| ||||||| || ||| ||||||| || ||| ||||||||||||||||||| |||| | || ||||| |
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| T |
8370587 |
agtatttaccaaacatttggaacaaaaaaggcggtcaaaaacttccaaactggcacttaagcttttgttcaaatatatctcagtttgaggtccattttct |
8370686 |
T |
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| Q |
214 |
ctattatcttcagaatgttgtccattttccttgatgtttt |
253 |
Q |
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| T |
8370687 |
ccaaaatcttcagaatgttggtccttttccttgatatttt |
8370726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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