View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_36 (Length: 424)
Name: NF0611_low_36
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 14 - 363
Target Start/End: Original strand, 37305250 - 37305609
Alignment:
| Q |
14 |
ctgttgccaacaattgtggaatttgagtccacatttgaggtggaagccaccaaatcagtggaaactgataaggaggagggtattttcttgacatgggagg |
113 |
Q |
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| T |
37305250 |
ctgttgccaacaattgtggaatttgagtccacatttgaggtggaagccaccaaatcagtggaaactgataaggaggagggtattttcttgacatgggagg |
37305349 |
T |
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| Q |
114 |
g----------tgactatttcaaatggaagaaaaccaatacttcaaggtctaaaaggctatgcaaaaccaggacaattcttagctataatgggtctttct |
203 |
Q |
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| T |
37305350 |
ggacctttgggtgactatttcaaatggaagaaaaccaatacttcaaggtctaaaaggctatgcaaaaccaggacaattcttagctataatgggtctttct |
37305449 |
T |
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| Q |
204 |
ggtagtgggaagtcaactcttcttgatgctttagcaaataatgaatggtatctatttaaaatatcttgtttgaccctattactttcatagtttatttaag |
303 |
Q |
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| T |
37305450 |
ggtagtgggaagtcaactcttcttgatgctttagcaaataatgaatggtatctatttaaaatatcttgtttgaccctattactttcatagtttatttaag |
37305549 |
T |
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| Q |
304 |
accctattatgtgatatgtaaatattatcacaagcatttgatgctggctgatgtattcat |
363 |
Q |
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| T |
37305550 |
accctattatgtgatatgtaaatattatcacaagcatttgatgctggctgatgtattcat |
37305609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 239
Target Start/End: Complemental strand, 37348058 - 37347945
Alignment:
| Q |
126 |
aatggaagaaaaccaatacttcaaggtctaaaaggctatgcaaaaccaggacaattcttagctataatgggtctttctggtagtgggaagtcaactcttc |
225 |
Q |
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| T |
37348058 |
aatgaaagcaaatcaattcttcagggtctaactggttatgcaaaaccagctcagcttttggctattatgggtccttctggttgtggaaaatctacacttc |
37347959 |
T |
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| Q |
226 |
ttgatgctttagca |
239 |
Q |
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| T |
37347958 |
ttgatgctttagca |
37347945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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