View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_38 (Length: 421)
Name: NF0611_low_38
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 54 - 407
Target Start/End: Original strand, 32798194 - 32798544
Alignment:
| Q |
54 |
tgatatttgttactaatttgttgattgaagttgaacgaccagtcaaaagcaaacacaccaactctctagaattaccagattcaatgatccgttttggtga |
153 |
Q |
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| T |
32798194 |
tgatatttgttactaatttgttgattgaagttgaacgaccagtcaaaagcaaacacaccaactctctagaattaccagattcaatgatccgttttagtga |
32798293 |
T |
|
| Q |
154 |
agccacatgaaaaataattgaaacattctatgaaaattacgtgacaatatcattgacatggaaagttcttgacaaattgtgaagtactagtggtcaccac |
253 |
Q |
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| T |
32798294 |
agccacatgaaaaataattgaaacattctatgaaaattacgtgacaatatcattgacatggaaagttcttgacaaattgtgaagtactagtggtcaccac |
32798393 |
T |
|
| Q |
254 |
tgataatttgtaattattttccttcaattgggtactcacatggtttgaagtacacacaatcactaacaacatttgtattgtgggacacaaatttcatgaa |
353 |
Q |
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| T |
32798394 |
tgataatttgtaattattttccttcaattgggtactcacattgtttgaagtacgcacaatcactaacaacatttgtattgtgggacacaaatttcatgta |
32798493 |
T |
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| Q |
354 |
tcaatttcaatctcacaagccctaataaagtctaaaagaaataatcaatacata |
407 |
Q |
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| T |
32798494 |
tcaatttcaatctcacaagccc---taaagtctaaaagaaataatcaatacata |
32798544 |
T |
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