View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_39 (Length: 412)
Name: NF0611_low_39
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 152 - 329
Target Start/End: Complemental strand, 4831244 - 4831065
Alignment:
| Q |
152 |
attcaatgttgttgggtgttctgttttgaagccctttgaaattgattggatcttgtgtaatcaatgggctgaata--tctcaagttattttcaattaatg |
249 |
Q |
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| T |
4831244 |
attcaatgttgttgggtgttctcttttgaagccctttgaaattgattggatcttgtgtgatcaatgggctgaataaatctcaagttattttcaattaatt |
4831145 |
T |
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| Q |
250 |
ttggattccaattgcatatagtcactaattcccacattcttgccatcaatattttcattgttgttttatcaagatataat |
329 |
Q |
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| T |
4831144 |
ttggattccaattgcatatagtcactaattcccacattcttgccatcaatattttcattgttgttttatcaagatataat |
4831065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 4831366 - 4831291
Alignment:
| Q |
30 |
ttactgactgagtgtagttagttcttgttgattaatggtttgattctgaatcgtgtaaaagtttgtagatgttcaa |
105 |
Q |
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| T |
4831366 |
ttactgactgagtgtagttagttcttgttgattaatggtttgattctgaatcgtgtaaaagtttgtagatgttcaa |
4831291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 4832634 - 4832549
Alignment:
| Q |
164 |
tgggtgttctgttttgaagccctttgaaattgattggatcttgtgtaatcaatgggctgaat--atctcaagttattttcaattaat |
248 |
Q |
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| T |
4832634 |
tgggtgttctgttttgaagccctttgaaattgattggatcttgtgtgatcaat-ggctgaataaatctcaagttgttttcaattaat |
4832549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 404
Target Start/End: Complemental strand, 4831051 - 4830960
Alignment:
| Q |
313 |
ttttatcaagatataatggcgcagaaaacaaacaaagtttgannnnnnnnnnnaactctaacttattgaggttgaaatacataacctatgat |
404 |
Q |
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| T |
4831051 |
ttttatctagatataatggcgcagaaaacaaacaaagtttgattattttttttaattataacttattgaggttgaaatacataccctatgat |
4830960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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