View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_40 (Length: 410)
Name: NF0611_low_40
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_40 |
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| [»] scaffold0651 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 30 - 410
Target Start/End: Original strand, 2978 - 3361
Alignment:
| Q |
30 |
attagtacaggatggagatgaagattcctaccaatgtttttgttctt---taaaccactagagatcaataatggtggtgtaagaattgccccacctgcag |
126 |
Q |
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||||| |||||||| |||||||| || |||||||||||||| ||||| |||||||||||| |||| ||||| ||||| |||| ||| |||||||| | |
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| T |
2978 |
attagcacaggatgaagatgaaggtttctaccaatgtttttattcttagttaaaccactagaaatcatcaatggaggtgttagaagtgctccacctgctg |
3077 |
T |
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| Q |
127 |
aaattgtcactttggcctcaatctgtagcttcattgtgactctactgtttaaagtcttggccaacactcccaaacatttcttcttctttctggtattggt |
226 |
Q |
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| T |
3078 |
aaattgttacttttgcttcaaattgcagcttcattgtgactccgctatttaaagtcttcgccaaaactcccaaacatttcttattctttctggtattggc |
3177 |
T |
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| Q |
227 |
attcttataattattatcaaacaagaatctctcagctttgcatcctgttattatcacagcatctttttcaacagcatctacaagccatgtagcttgagtc |
326 |
Q |
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| T |
3178 |
attcctataattattttcaaacaagaatctctcagctttacatcctgttataatcacagcacctttatcaacagcatctacaagccatgtagcttgagtc |
3277 |
T |
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| Q |
327 |
ccttgtttctcaccttttggacaaccataaccacatgaaccacaataatgattccctggtgaatttcttggcacataatcaact |
410 |
Q |
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| T |
3278 |
ccttgtttctctccctttggacaaccataaccacatgaaccacaataatgattccctggtgaatttcttggcacataatcaact |
3361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 30 - 410
Target Start/End: Complemental strand, 31320692 - 31320309
Alignment:
| Q |
30 |
attagtacaggatggagatgaagattcctaccaatgtttttgttctt---taaaccactagagatcaataatggtggtgtaagaattgccccacctgcag |
126 |
Q |
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| T |
31320692 |
attagcacaggatgaagatgaaggtttctaccaatgtttttattcttagttaaaccactagaaatcatcaatggaggtgttagaagtgctccacctgctg |
31320593 |
T |
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| Q |
127 |
aaattgtcactttggcctcaatctgtagcttcattgtgactctactgtttaaagtcttggccaacactcccaaacatttcttcttctttctggtattggt |
226 |
Q |
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| T |
31320592 |
aaattgttacttttgcttcaaattgcagcttcattgtgactccgctatttaaagtcttcgccaaaactcccaaacatttcttattctttctggtattggc |
31320493 |
T |
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| Q |
227 |
attcttataattattatcaaacaagaatctctcagctttgcatcctgttattatcacagcatctttttcaacagcatctacaagccatgtagcttgagtc |
326 |
Q |
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| T |
31320492 |
attcctataattattttcaaacaagaatctctcagctttacatcctgttataatcacagcacctttatcaacagcatctacaagccatgtagcttgagtc |
31320393 |
T |
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| Q |
327 |
ccttgtttctcaccttttggacaaccataaccacatgaaccacaataatgattccctggtgaatttcttggcacataatcaact |
410 |
Q |
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| T |
31320392 |
ccttgtttctctccctttggacaaccataaccacatgaaccacaataatgattccctggtgaatttcttggcacataatcaact |
31320309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 30 - 410
Target Start/End: Complemental strand, 31332945 - 31332562
Alignment:
| Q |
30 |
attagtacaggatggagatgaagattcctaccaatgtttttgttctt---taaaccactagagatcaataatggtggtgtaagaattgccccacctgcag |
126 |
Q |
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||||| |||||||| |||||||| || |||||||||||||| ||||| |||||||||||| |||| ||||| ||||| |||| ||| |||||||| | |
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| T |
31332945 |
attagcacaggatgaagatgaaggtttctaccaatgtttttattcttagttaaaccactagaaatcatcaatggaggtgttagaagtgctccacctgctg |
31332846 |
T |
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| Q |
127 |
aaattgtcactttggcctcaatctgtagcttcattgtgactctactgtttaaagtcttggccaacactcccaaacatttcttcttctttctggtattggt |
226 |
Q |
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| T |
31332845 |
aaattgttacttttgcttcaaattgcagcttcattgtgactccgctatttaaagtcttcgccaaaactcccaaacatttcttattctttctggtattggc |
31332746 |
T |
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| Q |
227 |
attcttataattattatcaaacaagaatctctcagctttgcatcctgttattatcacagcatctttttcaacagcatctacaagccatgtagcttgagtc |
326 |
Q |
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|||| |||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
31332745 |
attcctataattattttcaaacaagaatctctcagctttacatcctgttataatcacagcacctttatcaacagcatctacaagccatgtagcttgagtc |
31332646 |
T |
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| Q |
327 |
ccttgtttctcaccttttggacaaccataaccacatgaaccacaataatgattccctggtgaatttcttggcacataatcaact |
410 |
Q |
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| T |
31332645 |
ccttgtttctctccctttggacaaccataaccacatgaaccacaataatgattccctggtgaatttcttggcacataatcaact |
31332562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 406
Target Start/End: Original strand, 33521947 - 33522100
Alignment:
| Q |
258 |
tcagctttgcatcctgttattatcacagcatctttttcaacagcatctacaagccatgtagcttgagtcccttgtttc-----tcaccttttggacaacc |
352 |
Q |
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||||||||||||| ||||| ||| |||||| | | ||| |||||||| |||||||||||| | | ||||||||||| || ||||||| |||||| |
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| T |
33521947 |
tcagctttgcatcttgttagtattacagcaccgtgttccacagcatcgacaagccatgtaacatcggtcccttgttttgtttatctccttttgtacaacc |
33522046 |
T |
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| Q |
353 |
ataaccacatgaaccacaataatgattccctggtgaatttcttggcacataatc |
406 |
Q |
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| T |
33522047 |
atagttacaagaaccacagtaatgatgctctgatgaatttctcggcacataatc |
33522100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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