View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0611_low_42 (Length: 394)
Name: NF0611_low_42
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_42 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 77 - 394
Target Start/End: Original strand, 5910900 - 5911217
Alignment:
| Q |
77 |
acaacccagaaatcatgacattttgggttgatttcttgaattttatgaataaaaataccacctagatttggttgcataactgtgtgttaactttcaattg |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5910900 |
acaacccagaaatcatgacattttgggttgatttcttgagttttatgaataaaaataccacctagatttggttgcataactgtgtgttaactttcaattg |
5910999 |
T |
|
| Q |
177 |
catttgtaacaactgtttaagaaattggtatgtcta-tcatccaatcttgatggatttgtgtttcatgctatattatttcagaaaaatgagaatactatg |
275 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5911000 |
catttgtaacaactgtt-aagaaattggtatgtctaatcatccaatcttgatgtatgtgtgtttcatgctatattatttcagaaaaatgagaatactacg |
5911098 |
T |
|
| Q |
276 |
aacatggatgatagtaatagatacagtatgtaacttgttgaagtttttatgattcccaattccaatttttcctcagcgttttcatgtagtatctacgact |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5911099 |
aacatggatgatagtaatagatacagtatgtaacttgttgaagtttttatgattcccaattccaatttttcctcagcgttttcatgtagtatctacgact |
5911198 |
T |
|
| Q |
376 |
aaaattaacccaaaaatca |
394 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5911199 |
aaaattaacccaaaaatca |
5911217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 5910824 - 5910875
Alignment:
| Q |
28 |
gttaaagatacattatttcacgctgcatattgaattttgttttgatttcaca |
79 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5910824 |
gttaaagatacattatttcacgctgcatattgaattttgttttgatttcaca |
5910875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 159
Target Start/End: Original strand, 5917640 - 5917710
Alignment:
| Q |
86 |
aaatcatgacattttgggttgatttcttgaattttatgaataaaaataccacctagatttggttgcataactgt |
159 |
Q |
| |
|
|||||||||||||||| |||||||||| | ||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5917640 |
aaatcatgacattttgagttgatttctag--tttta-gaataaaaataccacctagatttggttgcatagctgt |
5917710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 5917540 - 5917572
Alignment:
| Q |
32 |
aagatacattatttcacgctgcatattgaattt |
64 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
5917540 |
aagatacattgtttcacgctgcatattgaattt |
5917572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 81 - 228
Target Start/End: Complemental strand, 364302 - 364159
Alignment:
| Q |
81 |
cccagaaatcatgacattttgggttgatttcttgaattttatgaataaaaataccacctagatttggttgcataactgtgtgttaactttcaattgcatt |
180 |
Q |
| |
|
|||| |||||||||||| ||| |||||||| | | |||| |||||||||||||| || |||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
364302 |
cccataaatcatgacatcttgtgttgattttt--attttttggaataaaaataccatcttgatttggttgcatagctgtgt--taactttcaattgcatt |
364207 |
T |
|
| Q |
181 |
tgtaacaactgtttaagaaattggtatgtctatcatccaatcttgatg |
228 |
Q |
| |
|
|||||||||| ||||||||||| ||| || |||||||| |||||| |
|
|
| T |
364206 |
tgtaacaacttgttaagaaattgatattgttaccatccaattttgatg |
364159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 364382 - 364332
Alignment:
| Q |
28 |
gttaaagatacattatttcacgctgcatattgaattttgttttgatttcaca |
79 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
364382 |
gttaaagatgcattgtttcacgctgcatattgaa-tttgttttgatttcaca |
364332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 39903256 - 39903304
Alignment:
| Q |
255 |
cagaaaaatgagaatactatgaacatggatgatagtaatagatacagta |
303 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39903256 |
cagaaaaatgaaaatactacgaacatggatgatagtaatagatacagta |
39903304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2922 times since January 2019
Visitors: 3831