View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0611_low_43 (Length: 388)

Name: NF0611_low_43
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0611_low_43
NF0611_low_43
[»] chr3 (2 HSPs)
chr3 (98-380)||(52163844-52164126)
chr3 (147-203)||(42171847-42171903)
[»] chr1 (2 HSPs)
chr1 (98-370)||(6634949-6635221)
chr1 (228-269)||(40207480-40207521)
[»] chr8 (1 HSPs)
chr8 (163-356)||(33346586-33346779)
[»] chr5 (2 HSPs)
chr5 (115-356)||(7266270-7266511)
chr5 (148-369)||(15964232-15964453)
[»] chr6 (1 HSPs)
chr6 (157-263)||(2498502-2498608)
[»] chr4 (1 HSPs)
chr4 (157-263)||(27101090-27101196)
[»] chr7 (1 HSPs)
chr7 (153-269)||(37500754-37500870)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 98 - 380
Target Start/End: Original strand, 52163844 - 52164126
Alignment:
Q  98 catagggtgcccaaagtgcatccaaaggacaaggcctactagcatccaatctaacccaaggtttacctttcccactccaatgcaacaaactcacaggacc 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52163844 catagggtgcccaaagtgcatccaaaggacaaggcctactagcatccaatctaacccaaggtttacctttcccactccaatgcaacaaactcacaggacc 52163943  T
Q  198 gggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattccacctatgatccaccggagcaatattcccggcaaaaacaagc 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52163944 gggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattccacctatgatccaccggagcaatattcccggcaaaaacaagc 52164043  T
Q  298 aaaaacggcggcaacgaacccaattcatagatcctcatcctcttctgcaactccatccaatcctcaatctttgcagtataatc 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52164044 aaaaacggcggcaacgaacccaattcatagatcctcatcctcttctgcaactccatccaatcctcaatctttgcagtataatc 52164126  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 42171903 - 42171847
Alignment:
Q  147 tctaacccaaggtttacctttcccactccaatgcaacaaactcacaggaccgggatg 203  Q
    ||||| |||||| || |||||||||||||||||||| | |||||| ||||| |||||    
T  42171903 tctaagccaaggcttccctttcccactccaatgcaaaagactcaccggaccaggatg 42171847  T

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Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 98 - 370
Target Start/End: Original strand, 6634949 - 6635221
Alignment:
Q  98 catagggtgcccaaagtgcatccaaaggacaaggcctactagcatccaatctaacccaaggtttacctttcccactccaatgcaacaaactcacaggacc 197  Q
    |||| ||||||||||| ||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||| |||||    
T  6634949 cataaggtgcccaaagagcatccaaaggacaaggtctattagcatccaatctcacccatggtttaccttttccactccaatgcaataaactcactggacc 6635048  T
Q  198 gggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattccacctatgatccaccggagcaatattcccggcaaaaacaagc 297  Q
     |||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||| |||| | ||| ||||||||||||    
T  6635049 aggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgttgattccatctatgatccactggaacaatttcccctgcaaaaacaagc 6635148  T
Q  298 aaaaacggcggcaacgaacccaattcatagatcctcatcctcttctgcaactccatccaatcctcaatctttg 370  Q
    ||||| || ||||| ||||| | ||||||||| ||||||||||| || || |||||||| |||||||||||||    
T  6635149 aaaaaaggtggcaatgaaccaagttcatagattctcatcctcttttgtaattccatccattcctcaatctttg 6635221  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 40207521 - 40207480
Alignment:
Q  228 attatcaccaccaagtccatgttgattccacctatgatccac 269  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  40207521 attatcacctccaagtccgtgttgattccacctatgatccac 40207480  T

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Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 163 - 356
Target Start/End: Complemental strand, 33346779 - 33346586
Alignment:
Q  163 cctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattccacctat 262  Q
    ||||| ||||||||||||||||||||||| || || ||||| | ||  | |||||| ||||||||||||||||| || || ||||| ||||||||||  |    
T  33346779 ccttttccactccaatgcaacaaactcaccgggcctggatgcaaatcccgacaaagcccacgaaaattatcaccgccgagcccatgctgattccaccggt 33346680  T
Q  263 gatccaccggagcaatattcccggcaaaaacaagcaaaaacggcggcaacgaacccaattcatagatcctcatcctcttctgcaactccatcca 356  Q
    |||||||||| | |||  ||||||||||||| | ||||||||||||||||||||| |  |||||||| ||||| ||||||||||||||||||||    
T  33346679 gatccaccggcgtaatcctcccggcaaaaaccaacaaaaacggcggcaacgaaccaagctcatagattctcattctcttctgcaactccatcca 33346586  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 115 - 356
Target Start/End: Original strand, 7266270 - 7266511
Alignment:
Q  115 gcatccaaaggacaaggcctactagcatccaatctaacccaaggtttacctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctac 214  Q
    |||||||| |||||||| | | ||||||| |  ||  |||| |||||||| |||||||||||||| |  |||||||| || || ||||| | ||  | ||    
T  7266270 gcatccaacggacaaggacgattagcatcaagcctggcccacggtttacccttcccactccaatgaagtaaactcaccgggcccggatgcaaatcccgac 7266369  T
Q  215 aaagaccacgaaaattatcaccaccaagtccatgttgattccacctatgatccaccggagcaatattcccggcaaaaacaagcaaaaacggcggcaacga 314  Q
    |||| ||| | ||||||||||| ||||| |||||||||||||||| |||||| |||||| | || || || || |||||||||| |||||||||||| ||    
T  7266370 aaagcccatggaaattatcaccgccaagcccatgttgattccaccgatgatcaaccggaactattttacctgcgaaaacaagcagaaacggcggcaatga 7266469  T
Q  315 acccaattcatagatcctcatcctcttctgcaactccatcca 356  Q
    ||| |  |||||||||||||| |||||||| | |||||||||    
T  7266470 accaagctcatagatcctcattctcttctgaagctccatcca 7266511  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 148 - 369
Target Start/End: Original strand, 15964232 - 15964453
Alignment:
Q  148 ctaacccaaggtttacctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccat 247  Q
    |||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| | |  |||||||| ||||   ||||||||||||||||||||||    
T  15964232 ctaacccaaggttttccttttccactccaatgcaataaactaacaggaccaggatgcaaagatctacaaacaccattcaaattatcaccaccaagtccat 15964331  T
Q  248 gttgattccacctatgatccaccggagcaatattcccggcaaaaacaagcaaaaacggcggcaacgaacccaattcatagatcctcatcctcttctgcaa 347  Q
    |||||||||| |||||||| |  |   ||| ||| || ||||||||||| ||||| || ||||| ||||| |  |||||||| ||  || |||| || ||    
T  15964332 gttgattccatctatgatcaatagcttcaacatttcctgcaaaaacaagtaaaaaaggtggcaatgaacctagctcatagattcttctcttcttttgtaa 15964431  T
Q  348 ctccatccaatcctcaatcttt 369  Q
    ||||||||| |  |||||||||    
T  15964432 ctccatccagttttcaatcttt 15964453  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 263
Target Start/End: Original strand, 2498502 - 2498608
Alignment:
Q  157 ggtttacctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattcc 256  Q
    ||||| ||||| ||||||||||| |||||||| || ||||| ||||| | | ||||||||  | ||  || ||||||||||||||| |||||||||||||    
T  2498502 ggtttccctttaccactccaatgtaacaaactaactggaccaggatgcaaacttctacaactatcaacaacattatcaccaccaagaccatgttgattcc 2498601  T
Q  257 acctatg 263  Q
    | |||||    
T  2498602 atctatg 2498608  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 263
Target Start/End: Original strand, 27101090 - 27101196
Alignment:
Q  157 ggtttacctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattcc 256  Q
    ||||| ||||| ||||||||||| |||||||| || ||||| ||||| | | ||||||||  | ||  || ||||||||||||||| |||||||||||||    
T  27101090 ggtttccctttaccactccaatgtaacaaactaactggaccaggatgcaaacttctacaactatcaacaacattatcaccaccaagaccatgttgattcc 27101189  T
Q  257 acctatg 263  Q
    | |||||    
T  27101190 atctatg 27101196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 269
Target Start/End: Original strand, 37500754 - 37500870
Alignment:
Q  153 ccaaggtttacctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttga 252  Q
    |||||||||||| |||||||||||||| | |||||| ||||| || ||||||||| | |||||   |||   || ||| || || || |  |||||||||    
T  37500754 ccaaggtttacccttcccactccaatgaagcaaactaacaggcccaggatgaagactcctacatttaccttcaatattgtcccctcctaaaccatgttga 37500853  T
Q  253 ttccacctatgatccac 269  Q
    |||||||||||||||||    
T  37500854 ttccacctatgatccac 37500870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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