View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_44 (Length: 370)
Name: NF0611_low_44
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 29 - 368
Target Start/End: Original strand, 27378215 - 27378559
Alignment:
| Q |
29 |
aggatttatgttgaagtacaagtacccacatcacatcagtatggatgattggttgta------gtggccatgtcaaaaattgcaaaggaggtcaaagtgg |
122 |
Q |
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| T |
27378215 |
aggatttatgttgaagtacaagtacctacatcgcatcagtatggttgattggttgtacttgtagtggccatgtcaaaaattgcaaaggaggtcaaagtgg |
27378314 |
T |
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| Q |
123 |
cataacaaatggatgctctcttttctcctacgttatatatatacggttattacagtactaaacaattaatcaattagtttaataacttccacttcgcata |
222 |
Q |
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|||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27378315 |
cataacaaatagatgctctcttttctcctacgttgt-tatatacggttattacagtactaaacaattaatcaattagtttaataacttccacttcgcata |
27378413 |
T |
|
| Q |
223 |
attgctgtagcactatagatggacccaaagacccatgcattataaaaaatatcaaaatcaaaattgaaataattagaatctgacaatattttaaaactgt |
322 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27378414 |
attgcggtagcactatagatggacccaaagacccatgcattataaaaaagatcaaaatcaaaattgaaataattagaatctgacaatattttaaaactgt |
27378513 |
T |
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| Q |
323 |
ttaggataaaaagttgacattgcctttaatttagctttcctaaagt |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27378514 |
ttaggataaaaagttgacattgcctttaatttagctttcctaaagt |
27378559 |
T |
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