View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_45 (Length: 367)
Name: NF0611_low_45
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 41705132 - 41705399
Alignment:
| Q |
17 |
atcatcacacaccactccatctacaaattcaaaaactcttctcctctctctgtattcaagttccaacacnnnnnnnncaaatac--tgtttaaccaaatg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| |
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| T |
41705132 |
atcatcacacaccactccatctacaaattcaaaaactcttctcctctct--gtattcaagttccaacacaaaaaaa-caaataccctgtttaaccaaatg |
41705228 |
T |
|
| Q |
115 |
gcttctcccctgttatttctcctcatcatcacactcttcatttcaccttcttcatctcaaatgctactattacctctaacacactcactctccataatag |
214 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41705229 |
gcttctcccctgttatttctcctcctcatcacactcttcatttcacattcttcatctcaaatgctactattacctctaacacactcactctccatgatag |
41705328 |
T |
|
| Q |
215 |
aattcaacacaacccaccacctccttaaatccacctcaactcactcattatcacgcttccaccgccataaa |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41705329 |
aattcaacacaacccaccacctccttaaatccacctcaactcactcattatcacgcttccaccgccataaa |
41705399 |
T |
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