View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_47 (Length: 363)
Name: NF0611_low_47
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 7 - 352
Target Start/End: Original strand, 12617973 - 12618318
Alignment:
| Q |
7 |
tgatcaaagtttcatctaatccatttgttgaaacatgccatggttcatggatcgaagggttatgatgatgatgatggtcgtcttcaaattcatcgtttgc |
106 |
Q |
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| T |
12617973 |
tgatcaaagtttcatctaatccatttgttgaaacatgccatggttcatggatcgaagggttatgatgatgatgatggtcgtcttcaaattcatcgtttgc |
12618072 |
T |
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| Q |
107 |
ttcacgcgattcacttgccgatgattctctgcgaccacaatactttgatattatggtgtagtaagttacaagaagaaaagcacttgctaagattccaatg |
206 |
Q |
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| T |
12618073 |
ttcacgcgattcactcgccgatgattctctgcgaccacaatactttgatattatggtgtagtaagttacaagaagaaaagcacttgctaagattccaatg |
12618172 |
T |
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| Q |
207 |
attgcaatgacaagaggagaaaaatttggacttgaatcttcatcagggaattcaaagggagaaggagaaggtggagggtagattacatagcaccattgtg |
306 |
Q |
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| T |
12618173 |
attgcaatgacaagaggagaaaaatttggacttgaatcttcatcagggaattcaaagggagaaggagaaggtggagggtagattgcatagcaccattgtg |
12618272 |
T |
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| Q |
307 |
gacaatagacgctacaaaaaccttgagaacaatctttgctattcat |
352 |
Q |
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| T |
12618273 |
gacaatagacgctacaaaaaccttgagaacaatctttgctattcat |
12618318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 346
Target Start/End: Original strand, 27771880 - 27772097
Alignment:
| Q |
129 |
gattctctgcgaccacaatactttgatattatggtgtagtaagttacaagaagaaaagcacttgctaagattccaatgattgcaatgacaagaggagaaa |
228 |
Q |
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| T |
27771880 |
gattctctgtgaccacaatatttggatattagagtgtaataagttagtagtaaaaaagcagtggctaaaactcccaaaattgcaataacaagaggagaaa |
27771979 |
T |
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| Q |
229 |
aatttggacttgaatcttcatcagggaattcaaagggagaaggagaaggtggagggtagattacatagcaccattgtggacaatagacgctacaaaaacc |
328 |
Q |
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| T |
27771980 |
aatatggttttgaatcatcatcagggtattgaaaaggtggtggtggtggaggagtgtaaactatgtagcaccattgcggacaatacacgctacaaaatcc |
27772079 |
T |
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| Q |
329 |
ttgagaacaatctttgct |
346 |
Q |
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| T |
27772080 |
ttgagaacaatctttgct |
27772097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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