View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0611_low_51 (Length: 349)
Name: NF0611_low_51
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_51 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 313
Target Start/End: Complemental strand, 18153783 - 18153479
Alignment:
| Q |
10 |
gcacagaggatacttgttttactttcaccgnnnnnnnnttgttcatagtttttatcaatccttcaaaaatatcaatcacaagacgagtttgaattgtaac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
18153783 |
gcacagaggatacttgttttactttcaccgaaaaaaaattgttcatagtttttatcaatccttcaaaaatatcaatcacaagacgagtttgaattgtgac |
18153684 |
T |
|
| Q |
110 |
ccttttgatattcttgctaattttcaactt-aagtagagattcataattgccgatataaaatatcaaaatgaatttgatacaagaagagaatgaatgtat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18153683 |
ccttttgatattcttgctaattttcaactttaagtagagattcataattgccgatataaaatatcaaaatgaatttgatacaagaagagaatgaatgtat |
18153584 |
T |
|
| Q |
209 |
gtatttatttctgaactattaaatatgaagataagagatagagagtatgacacaaatacaataaggttatcatggttcacccaaatattgagatttttca |
308 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18153583 |
gtgtttatttctgaactattaaatatgaagataagagatagagaatatgacacaaatacaataaggttatcatggttcacccaaatattgagatttttca |
18153484 |
T |
|
| Q |
309 |
atatg |
313 |
Q |
| |
|
||||| |
|
|
| T |
18153483 |
atatg |
18153479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 71 - 210
Target Start/End: Complemental strand, 18160508 - 18160367
Alignment:
| Q |
71 |
ttcaaaaatatcaatcacaagac----gagtttgaattgtaacccttttgatattcttgctaattttcaactt-aagtagagattcataattgccgatat |
165 |
Q |
| |
|
||||||||||||||||| |||| |||||| |||||| |||||||| || || | ||||||||| ||||| ||||||||||||||||||| | || | |
|
|
| T |
18160508 |
ttcaaaaatatcaatcataagaaagaggagtttaaattgtgacccttttaatgttttagctaatttttaactttaagtagagattcataattgtcaatct |
18160409 |
T |
|
| Q |
166 |
aaaatatcaaaatgaatttgatacaagaagagaatgaatgtatgt |
210 |
Q |
| |
|
|| ||||||||| ||||| |||| |||||||||||||||||| |
|
|
| T |
18160408 |
gaagtatcaaaataaattttatac---aagagaatgaatgtatgt |
18160367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 33699622 - 33699718
Alignment:
| Q |
170 |
tatcaaaatgaatttgatacaagaagagaatgaatgtatgtatttatttctgaactattaaatatgaagataagagatagagagtatgacacaaata |
266 |
Q |
| |
|
||||||||| ||||||||||||||||||| || | |||| ||| ||||||||||| |||||| ||| |||| |||| ||| |||||||||||| |
|
|
| T |
33699622 |
tatcaaaataaatttgatacaagaagagattggtttaatgtgtttgcttctgaactatcaaatataaagttaagggataaagaagatgacacaaata |
33699718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 32009864 - 32009904
Alignment:
| Q |
170 |
tatcaaaatgaatttgatacaagaagagaatgaatgtatgt |
210 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32009864 |
tatcaaaatgaatttgatacaagaagaatatgaatgtatgt |
32009904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 198
Target Start/End: Complemental strand, 17748358 - 17748330
Alignment:
| Q |
170 |
tatcaaaatgaatttgatacaagaagaga |
198 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
17748358 |
tatcaaaatgaatttgatacaagaagaga |
17748330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2868 times since January 2019
Visitors: 3829