View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_52 (Length: 345)
Name: NF0611_low_52
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_52 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 117 - 338
Target Start/End: Original strand, 13729311 - 13729532
Alignment:
| Q |
117 |
taaattatacttaagatttcattttgattgggtcataaagatttcattgtgtaaaacacagatttttgagctttttaaatctaagctaatttccaccgtg |
216 |
Q |
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| T |
13729311 |
taaattatacttaagatttcattttgatttggtcataaagatttcattgtgtaaaacacagatttttgagctttttaaatctaagctaatttccaccgtg |
13729410 |
T |
|
| Q |
217 |
tcatgcatattccaatatttttagttatgaatttaaagttggacttgcatgtgttccacatatgactattacaagtgatagatgggcgagtcgttgtctt |
316 |
Q |
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| T |
13729411 |
tcatgcatattccaatatttttagttatgaatttaaagttggacttgcatgtgttccacatatgactattacaagtgatagatgggcgagtcgttgtctt |
13729510 |
T |
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| Q |
317 |
cggatgtttagtttctctgctc |
338 |
Q |
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|||||||||||||||||||||| |
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| T |
13729511 |
cggatgtttagtttctctgctc |
13729532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 13728852 - 13728935
Alignment:
| Q |
42 |
agatttcaatgccaaaaattgttctagattttaaattattcttgagatttcaatgccaaaaattgttctaacttttaaattata |
125 |
Q |
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| T |
13728852 |
agatttcaatgccaaaaattgttctagattttaaattattcttgagatttcaatgccaaaaattgttctaaattttaaattata |
13728935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 13728855 - 13728934
Alignment:
| Q |
1 |
tttcaatgccaaaaattgttctagattttaaattattcttgagatttcaatgccaaaaattgttctagattttaaattat |
80 |
Q |
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| T |
13728855 |
tttcaatgccaaaaattgttctagattttaaattattcttgagatttcaatgccaaaaattgttctaaattttaaattat |
13728934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 13728852 - 13728903
Alignment:
| Q |
86 |
agatttcaatgccaaaaattgttctaacttttaaattatacttaagatttca |
137 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||| |||||||| |
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| T |
13728852 |
agatttcaatgccaaaaattgttctagattttaaattattcttgagatttca |
13728903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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