View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_57 (Length: 334)
Name: NF0611_low_57
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 239
Target Start/End: Original strand, 2352547 - 2352760
Alignment:
| Q |
22 |
caaaggcaagaaatcattggacggacatatgctacgtgtacggctaagatttaatgttcaggggacctcaaaataatagaaaatcctccgtatttttggc |
121 |
Q |
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| T |
2352547 |
caaaggcaagaaatcattggac----atatgctacgtgtacggctaagatttaatgttcaggggacctcaaaataatagaaaatcctccgtatttttggc |
2352642 |
T |
|
| Q |
122 |
tttctccggttttgtgtacgggttagggtgtgtcatgtgtaacgagttgatcattaccttgtgacatgtttcttattgaaagagcaaattaattaaggca |
221 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2352643 |
tttttccggttttgtgtacgggttagggtgtgtcatgtgtaacgagttgatcattaccttgtgacatgtttcttattgaaagagcaaattaattaaggca |
2352742 |
T |
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| Q |
222 |
tcaattttaatagataca |
239 |
Q |
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|||||||||||||||||| |
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| T |
2352743 |
tcaattttaatagataca |
2352760 |
T |
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