View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_59 (Length: 324)
Name: NF0611_low_59
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 27378624 - 27378929
Alignment:
| Q |
1 |
aaaagaaaaaagaaaggatttggattcctaactgtagtggtataagcatacagttgcacgctaatcctaaccattgatttaagatcatacagtttatttt |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| |
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| T |
27378624 |
aaaagaaaaaagaaagaatttggattcctaactgtagt---ataagcatacagttgcacgct--tcctaaccattgatttaagatcatagagttcatttt |
27378718 |
T |
|
| Q |
101 |
gaacaataacggattcaactttagtattcactctcatttcctctaaactcgtaaacaaaagctaaacaatctcgaccattaatttaaaattcgatggtta |
200 |
Q |
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|||||| || ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
27378719 |
gaacaacaatggaatcaacattagtattcactctcatttcctctaaactcgtaaacaaaagctaaacaatctcgaccattaatttaaaatccgacggtta |
27378818 |
T |
|
| Q |
201 |
agatatgcatcaaatccaaattctgcatcaaaaataacaagtgggctcaagcaaagcccacatgacccatctccctctgtcacatgggcttgactacgat |
300 |
Q |
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| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27378819 |
aaatatgcatcaaatccaaattc-gcataaaaaataacaagtgggctcaagcaaagcccacatgacccatctccctctgtcacatgggcttgactacgat |
27378917 |
T |
|
| Q |
301 |
atcagcaacagc |
312 |
Q |
| |
|
|||||||||||| |
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| T |
27378918 |
atcagcaacagc |
27378929 |
T |
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