View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_64 (Length: 286)
Name: NF0611_low_64
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_64 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 30 - 279
Target Start/End: Complemental strand, 9904396 - 9904146
Alignment:
| Q |
30 |
cccttccacatagattatcccttgttgctaatctgctatgannnnnnnnccaaactagacaataaactttaaacgggaccaatttatgccaaactttcaa |
129 |
Q |
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| T |
9904396 |
cccttccacatagattatcccttgttgctaatctgctatgattttttttccaaactagacaataaactttaaacgggaccaatttatgccaaactttcaa |
9904297 |
T |
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| Q |
130 |
ccatatagattccgaagagcttgacattttagaa-tcaatcccaccatataaacttctttaactaaatacaaattacgaggctggacacttcctaagtct |
228 |
Q |
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| T |
9904296 |
ccatatagattccgaagagcttgacattttagaaatcaatcccaccatataaacctctttaactaaatacaaattacgaggctggacacttcctaagtct |
9904197 |
T |
|
| Q |
229 |
atgttacaaatgtttttccacgaaacagaactacctctacttcctatgcta |
279 |
Q |
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| T |
9904196 |
atgttacaaatgtttttccacgaaacagaactacctctacttcctatgcta |
9904146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 172
Target Start/End: Original strand, 23702603 - 23702737
Alignment:
| Q |
39 |
atagattatcccttgttgctaatctgctatgannnnnnnnccaaactagacaataaactttaaacgggaccaatttatgccaaactttcaaccatataga |
138 |
Q |
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| T |
23702603 |
atagattatcccttgttgataatctattatgaaacagtctccaaactagacaagagacttttaacgggaccgatttatgccaaacttacgaccatacatg |
23702702 |
T |
|
| Q |
139 |
ttccgaagagcttgacattttag-aatcaatccca |
172 |
Q |
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| T |
23702703 |
atccgaagagttttacatattagaaatcaatccca |
23702737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 162
Target Start/End: Complemental strand, 24828215 - 24828146
Alignment:
| Q |
93 |
aaactttaaacgggaccaatttatgccaaactttcaaccatatagattccgaagagcttgacattttaga |
162 |
Q |
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||||||| ||||||||| ||||||||||| |||| ||||||||| |||||||| |||||||| ||||| |
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| T |
24828215 |
aaacttttaacgggaccgatttatgccaagcttttgaccatataggatccgaagaacttgacatattaga |
24828146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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