View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_66 (Length: 277)
Name: NF0611_low_66
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 30 - 261
Target Start/End: Complemental strand, 40725658 - 40725429
Alignment:
| Q |
30 |
ctatcaaaaacgtcatattcattattctaggccaataacaaagatatatttatttctctaaaacaaaaatatattgtattataattttgttttatacact |
129 |
Q |
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| T |
40725658 |
ctatcaaaaacgtcatattcattattctaggccaataacaaagatatatttatttctctaaaacaaaaatatattctattataattttgttttatacact |
40725559 |
T |
|
| Q |
130 |
aaatttatttacacatacattcgaaaaatcactccataataatattttgaaagnnnnnnnntcactccataattgatatctttacaaatatgaaatatct |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40725558 |
aaatttatttacacatacattcgaaaaatcactccataataatattttgaaa--aaaaaaatcactccataattgatatctttacaaatatgaaatatct |
40725461 |
T |
|
| Q |
230 |
atttatatgttttcattggactcacgggttaa |
261 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
40725460 |
atttatatgttttcattggactcacgggttaa |
40725429 |
T |
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