View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0611_low_67 (Length: 273)

Name: NF0611_low_67
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0611_low_67
NF0611_low_67
[»] chr4 (4 HSPs)
chr4 (31-273)||(35341324-35341568)
chr4 (43-98)||(4305753-4305808)
chr4 (57-98)||(25753200-25753241)
chr4 (57-98)||(53823433-53823474)
[»] chr1 (11 HSPs)
chr1 (31-98)||(46814453-46814520)
chr1 (31-98)||(7857681-7857748)
chr1 (31-98)||(24658957-24659024)
chr1 (51-98)||(27031846-27031893)
chr1 (183-241)||(12395505-12395563)
chr1 (50-98)||(31585765-31585813)
chr1 (50-98)||(46692824-46692872)
chr1 (208-241)||(15954092-15954125)
chr1 (57-98)||(17033614-17033655)
chr1 (50-98)||(5389426-5389474)
chr1 (50-98)||(41920480-41920528)
[»] chr2 (4 HSPs)
chr2 (31-98)||(14405226-14405293)
chr2 (31-98)||(7874319-7874386)
chr2 (57-97)||(2062918-2062958)
chr2 (50-97)||(39338870-39338917)
[»] chr7 (10 HSPs)
chr7 (31-98)||(6584937-6585004)
chr7 (31-98)||(3419642-3419709)
chr7 (31-98)||(34389990-34390057)
chr7 (39-98)||(35745821-35745880)
chr7 (50-98)||(41089753-41089801)
chr7 (31-98)||(3867144-3867211)
chr7 (43-98)||(10244210-10244265)
chr7 (50-97)||(47325890-47325937)
chr7 (57-98)||(6716748-6716789)
chr7 (50-98)||(38306289-38306337)
[»] chr3 (7 HSPs)
chr3 (31-98)||(23328336-23328403)
chr3 (31-98)||(19176530-19176597)
chr3 (31-98)||(43012403-43012470)
chr3 (34-98)||(9584042-9584106)
chr3 (50-98)||(17550985-17551033)
chr3 (31-98)||(40023558-40023625)
chr3 (57-98)||(47945734-47945775)
[»] chr6 (2 HSPs)
chr6 (182-273)||(7952263-7952357)
chr6 (50-98)||(3117521-3117569)
[»] chr8 (11 HSPs)
chr8 (31-98)||(15821365-15821432)
chr8 (43-98)||(16457459-16457514)
chr8 (50-98)||(24995400-24995448)
chr8 (50-96)||(9519529-9519575)
chr8 (50-96)||(37986863-37986909)
chr8 (57-98)||(17657014-17657055)
chr8 (209-241)||(9543198-9543230)
chr8 (184-273)||(26762808-26762901)
chr8 (50-98)||(31207367-31207415)
chr8 (50-98)||(32066300-32066348)
chr8 (31-95)||(38577776-38577840)
[»] chr5 (6 HSPs)
chr5 (50-97)||(698390-698437)
chr5 (57-98)||(7195251-7195292)
chr5 (186-240)||(39736496-39736552)
chr5 (50-98)||(18593271-18593319)
chr5 (185-241)||(28578532-28578588)
chr5 (50-98)||(34378126-34378174)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 31 - 273
Target Start/End: Original strand, 35341324 - 35341568
Alignment:
Q  31 gagcacagaacaaaaggctaaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagttttacatataagcgtcttatattcttaaatga 130  Q
    ||||||| |||||||||| |||||||||||||||||||| |||||||| |||||||||  |||||||||||||||||| |||||||||||||||||||||    
T  35341324 gagcacaaaacaaaaggccaaaaaccaacttgagccaaagagctgacttccgatctcggatcaaaagttttacatatatgcgtcttatattcttaaatga 35341423  T
Q  131 aaaatatgagaagatattttattaaaaact--catgtgcctttaaattttgtgggatttaatttatatacacggtcggtgtaaagatcttttacattgtc 228  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35341424 aaaatatgagaagatattttattaaaaactgtcatgtgcctttaaattttgtgggatttaatttatatacacggtcggtgtaaagatcttttacattgtc 35341523  T
Q  229 aatcaatcataacggatcattaaaaacattttactttaatcataa 273  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||    
T  35341524 aatcaatcataacagatcattaaaaacatttaactttaatcataa 35341568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 4305808 - 4305753
Alignment:
Q  43 aaaggctaaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    |||| ||||||||||||||||| |||| | || |||||||||||||| ||||||||    
T  4305808 aaagcctaaaaaccaacttgagacaaagaactaactcccgatctcgaatcaaaagt 4305753  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 25753241 - 25753200
Alignment:
Q  57 aacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||||||||| | ||||||||||||||||| ||||||||    
T  25753241 aacttgagccaaagaactgactcccgatctcgaatcaaaagt 25753200  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 53823433 - 53823474
Alignment:
Q  57 aacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||||||||| | ||||||||||||||||| ||||||||    
T  53823433 aacttgagccaaagaactgactcccgatctcgaatcaaaagt 53823474  T

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Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 46814453 - 46814520
Alignment:
Q  31 gagcacagaacaaaaggctaaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  46814453 gagcacaaaacaaaagccaaaaaaccaacttgagccaaaaagctgactcccgatctcgaatcaaaagt 46814520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 7857748 - 7857681
Alignment:
Q  31 gagcacagaacaaaaggctaaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||| |||||||||| |||||||||||| ||| ||| || |||||||||||||||| ||||||||    
T  7857748 gagcacaaaacaaaaggccaaaaaccaacttcagcaaaagagttgactcccgatctcgaatcaaaagt 7857681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 24659024 - 24658957
Alignment:
Q  31 gagcacagaacaaaaggctaaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||| ||| |||| | |||||||||||| ||||||| ||||||||||||||||||| ||||||||    
T  24659024 gagcacaaaaccaaagcccaaaaaccaacttcagccaaagagctgactcccgatctcgaatcaaaagt 24658957  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 27031846 - 27031893
Alignment:
Q  51 aaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||||||||    
T  27031846 aaaaccaacttgagccaaagagctgactctcgatctcgaatcaaaagt 27031893  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 12395505 - 12395563
Alignment:
Q  183 gatttaatttatatacacggtcggtgtaaagatcttttacattgtcaatcaatcataac 241  Q
    ||||||||| |||||||| ||| |||||||||  ||||||| |||||||||||||||||    
T  12395505 gatttaattcatatacactgtcagtgtaaagagattttacagtgtcaatcaatcataac 12395563  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 31585765 - 31585813
Alignment:
Q  50 aaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||||||||||| |||| | ||||||||||||||||| ||||||||    
T  31585765 aaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagt 31585813  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 46692824 - 46692872
Alignment:
Q  50 aaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    |||||||||||||||||||| | || |||||||||||||| ||||||||    
T  46692824 aaaaaccaacttgagccaaagaactaactcccgatctcgaatcaaaagt 46692872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 15954125 - 15954092
Alignment:
Q  208 gtaaagatcttttacattgtcaatcaatcataac 241  Q
    |||||||| |||||||||||||||||||||||||    
T  15954125 gtaaagattttttacattgtcaatcaatcataac 15954092  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 17033655 - 17033614
Alignment:
Q  57 aacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||| ||||| | ||||||||||||||||||||||||||    
T  17033655 aacttgaaccaaagaactgactcccgatctcgattcaaaagt 17033614  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 5389426 - 5389474
Alignment:
Q  50 aaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    |||||| |||||||| |||| | ||||||||||||||||| ||||||||    
T  5389426 aaaaacaaacttgagtcaaagaactgactcccgatctcgaatcaaaagt 5389474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 41920528 - 41920480
Alignment:
Q  50 aaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    |||| |||||||||| |||| | ||||||||||||||||| ||||||||    
T  41920528 aaaatccaacttgagtcaaagaactgactcccgatctcgaatcaaaagt 41920480  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 14405293 - 14405226
Alignment:
Q  31 gagcacagaacaaaaggctaaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||| |||||||| | |||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  14405293 gagcacaaaacaaaagcccaaaaaccaacttgagccaaagagctgactcccgatctcgaatcaaaagt 14405226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 7874386 - 7874319
Alignment:
Q  31 gagcacagaacaaaaggctaaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||| |||||||| | ||||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  7874386 gagcacaaaacaaaagcccaaaaaccaacttgagtcaaagagctgactcccgatctcgaatcaaaagt 7874319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 2062958 - 2062918
Alignment:
Q  57 aacttgagccaaaaagctgactcccgatctcgattcaaaag 97  Q
    ||||||||||||| ||||||||||||||||||| |||||||    
T  2062958 aacttgagccaaagagctgactcccgatctcgaatcaaaag 2062918  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 39338870 - 39338917
Alignment:
Q  50 aaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaag 97  Q
    ||||||||||||||| |||| | ||||||||||||||||| |||||||    
T  39338870 aaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaag 39338917  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 6585004 - 6584937
Alignment:
Q  31 gagcacagaacaaaaggctaaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||| |||||||| | |||||||||||| ||||||| ||||||||||||||||||| ||||||||    
T  6585004 gagcacaaaacaaaagcccaaaaaccaacttaagccaaagagctgactcccgatctcgaatcaaaagt 6584937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 3419642 - 3419709
Alignment:
Q  31 gagcacagaacaaaaggctaaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||||||  |||| | ||||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  3419642 gagcacagaaacaaagcccaaaaaccaacttgagtcaaagagctgactcccgatctcgaatcaaaagt 3419709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 34390057 - 34389990
Alignment:
Q  31 gagcacagaacaaaaggctaaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||| || ||||| | |||||||||||| ||||||| ||||||||||||||||||| ||||||||    
T  34390057 gagcacaaaataaaagcccaaaaaccaacttaagccaaagagctgactcccgatctcgaatcaaaagt 34389990  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 35745821 - 35745880
Alignment:
Q  39 aacaaaaggctaaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    |||||||| | |||||||||||||||||||| || ||||| |||||||||| ||||||||    
T  35745821 aacaaaagcccaaaaaccaacttgagccaaagagatgacttccgatctcgaatcaaaagt 35745880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 41089753 - 41089801
Alignment:
Q  50 aaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||||||||||| |||| ||||||||||| ||||||| ||||||||    
T  41089753 aaaaaccaacttgagtcaaagagctgactcccaatctcgaatcaaaagt 41089801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 3867211 - 3867144
Alignment:
Q  31 gagcacagaacaaaaggctaaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||| | |||||| | ||||||||||||||| |||| | |||||||||| |||||| ||||||||    
T  3867211 gagcacaaagcaaaagcccaaaaaccaacttgagtcaaagaactgactcccggtctcgaatcaaaagt 3867144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 10244265 - 10244210
Alignment:
Q  43 aaaggctaaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    |||||| |||||| |||||||| |||| | ||||||||||||||||| ||||||||    
T  10244265 aaaggccaaaaactaacttgagtcaaagaactgactcccgatctcgaatcaaaagt 10244210  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 47325890 - 47325937
Alignment:
Q  50 aaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaag 97  Q
    ||||||||||||||| |||| ||||||||||||||||| | |||||||    
T  47325890 aaaaaccaacttgagtcaaagagctgactcccgatctcaaatcaaaag 47325937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 6716748 - 6716789
Alignment:
Q  57 aacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||||||||| | ||||||||||||||||| ||||||||    
T  6716748 aacttgagccaaagaactgactcccgatctcgaatcaaaagt 6716789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 38306337 - 38306289
Alignment:
Q  50 aaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||||||||||| |||| | ||||||||| ||||||| ||||||||    
T  38306337 aaaaaccaacttgagtcaaagaactgactcccaatctcgaatcaaaagt 38306289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 23328336 - 23328403
Alignment:
Q  31 gagcacagaacaaaaggctaaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||| ||||||||   ||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  23328336 gagcacaaaacaaaagctcaaaaaccaacttgagccaaaaagctaactcccgatctcgaatcaaaagt 23328403  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 19176597 - 19176530
Alignment:
Q  31 gagcacagaacaaaaggctaaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||| | |||||| | ||||||||||||||| |||| | ||||||||||||||||| ||||||||    
T  19176597 gagcacaaatcaaaagcccaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagt 19176530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 43012470 - 43012403
Alignment:
Q  31 gagcacagaacaaaaggctaaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||| ||||||||   ||||||||||||||| |||| | ||||||||||||||||| ||||||||    
T  43012470 gagcacaaaacaaaagctcaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagt 43012403  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 9584042 - 9584106
Alignment:
Q  34 cacagaacaaaaggctaaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    |||| |||||||| | |||||||| |||||| |||| | ||||||||||||||||| ||||||||    
T  9584042 cacaaaacaaaagcccaaaaaccatcttgagacaaagaactgactcccgatctcgaatcaaaagt 9584106  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 17551033 - 17550985
Alignment:
Q  50 aaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||||||||||| |||| | ||||||||||||||||| ||||||||    
T  17551033 aaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagt 17550985  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 40023558 - 40023625
Alignment:
Q  31 gagcacagaacaaaaggctaaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||| |||||||| | |||||||||||| ||||||| |   ||||||||||||||| ||||||||    
T  40023558 gagcacaaaacaaaagcccaaaaaccaacttaagccaaagaatcgactcccgatctcgaatcaaaagt 40023625  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 47945775 - 47945734
Alignment:
Q  57 aacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||||||||| | ||||||||||||||||| ||||||||    
T  47945775 aacttgagccaaataactgactcccgatctcgaatcaaaagt 47945734  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 7952263 - 7952357
Alignment:
Q  182 ggatttaatttatatacacggtcggtgtaaagatcttttacattgtcaatcaatcataac----ggatcattaaaaacattttactttaatcataa 273  Q
    |||||||||| |||||||| |||||| ||||||  ||  |||||||||||||||||||||    |||||||||||||||||| ||||| |||||||    
T  7952263 ggatttaattcatatacacagtcggtctaaagaa-ttcaacattgtcaatcaatcataaccgtcggatcattaaaaacatttcacttttatcataa 7952357  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 3117569 - 3117521
Alignment:
Q  50 aaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||||||||||| |||| | |||||||||||||| || ||||||||    
T  3117569 aaaaaccaacttgagtcaaagaactgactcccgatcttgaatcaaaagt 3117521  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 15821365 - 15821432
Alignment:
Q  31 gagcacagaacaaaaggctaaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||| |||||||| | |||||||||| | || |||| ||||||||||||||||||| ||||||||    
T  15821365 gagcacaaaacaaaagcccaaaaaccaacataagtcaaagagctgactcccgatctcgaatcaaaagt 15821432  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 16457459 - 16457514
Alignment:
Q  43 aaaggctaaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    |||| ||||||||||||||||| |||| | ||||||||||||||||| ||||||||    
T  16457459 aaagcctaaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagt 16457514  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 24995400 - 24995448
Alignment:
Q  50 aaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||||||||||| |||| | ||||||||||||||||| ||||||||    
T  24995400 aaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaagt 24995448  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 9519575 - 9519529
Alignment:
Q  50 aaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaa 96  Q
    ||||||||||||||| |||| | ||||||||||||||||| ||||||    
T  9519575 aaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaa 9519529  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 37986863 - 37986909
Alignment:
Q  50 aaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaa 96  Q
    ||||||||||||||| |||| | ||||||||||||||||| ||||||    
T  37986863 aaaaaccaacttgagtcaaagaactgactcccgatctcgaatcaaaa 37986909  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 17657014 - 17657055
Alignment:
Q  57 aacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||||||||| | ||||||||||||||||| ||||||||    
T  17657014 aacttgagccaaagaactgactcccgatctcgaatcaaaagt 17657055  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 9543230 - 9543198
Alignment:
Q  209 taaagatcttttacattgtcaatcaatcataac 241  Q
    ||||||| |||||||||||||||||||||||||    
T  9543230 taaagattttttacattgtcaatcaatcataac 9543198  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 273
Target Start/End: Original strand, 26762808 - 26762901
Alignment:
Q  184 atttaatttatatacacggtcggtgtaaagatcttttacattgtcaatcaatcataa----cggatcattaaaaacattttactttaatcataa 273  Q
    |||||||||||||  || |||||| | ||||| || || ||||||||||||||||||    | ||||| ||||||| ||| |||||||||||||    
T  26762808 atttaatttatattgactgtcggtatgaagattttctatattgtcaatcaatcataatcctcagatcagtaaaaacgtttgactttaatcataa 26762901  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 31207367 - 31207415
Alignment:
Q  50 aaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    |||| |||||||||| |||| | ||||||||||||||||| ||||||||    
T  31207367 aaaatccaacttgagtcaaagaactgactcccgatctcgaatcaaaagt 31207415  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 32066300 - 32066348
Alignment:
Q  50 aaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||||||| ||| |||| |||||||||||||| |||| ||||||||    
T  32066300 aaaaaccaactggagtcaaagagctgactcccgatttcgaatcaaaagt 32066348  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 38577776 - 38577840
Alignment:
Q  31 gagcacagaacaaaaggctaaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaa 95  Q
    ||||||| |||||||| | |||||||||||| | ||||| | || |||||||||||||| |||||    
T  38577776 gagcacaaaacaaaagtccaaaaaccaacttaaaccaaagaactaactcccgatctcgaatcaaa 38577840  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 698437 - 698390
Alignment:
Q  50 aaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaag 97  Q
    ||||||||||||||| |||| || |||||||||||||||| |||||||    
T  698437 aaaaaccaacttgagtcaaagagttgactcccgatctcgaatcaaaag 698390  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 7195251 - 7195292
Alignment:
Q  57 aacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||||||||| | ||||||||||||||||| ||||||||    
T  7195251 aacttgagccaaagaactgactcccgatctcgaatcaaaagt 7195292  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 39736496 - 39736552
Alignment:
Q  186 ttaatttatatacacggtcggtgtaaaga--tcttttacattgtcaatcaatcataa 240  Q
    ||||||||||||||| ||||| |||||||  | |||||| |||||||||||||||||    
T  39736496 ttaatttatatacactgtcggcgtaaagattttttttacgttgtcaatcaatcataa 39736552  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 18593319 - 18593271
Alignment:
Q  50 aaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||||||||||| |||| | || |||||||||||||| ||||||||    
T  18593319 aaaaaccaacttgagtcaaagaactaactcccgatctcgaatcaaaagt 18593271  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 28578532 - 28578588
Alignment:
Q  185 tttaatttatatacacggtcggtgtaaagatcttttacattgtcaatcaatcataac 241  Q
    ||||||| ||||||||  ||  |||||| || |||||||||||||||||||||||||    
T  28578532 tttaattcatatacactttcaatgtaaaaatgttttacattgtcaatcaatcataac 28578588  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 34378174 - 34378126
Alignment:
Q  50 aaaaaccaacttgagccaaaaagctgactcccgatctcgattcaaaagt 98  Q
    ||||||||||||| | |||| | ||||||||||||||||| ||||||||    
T  34378174 aaaaaccaacttgtgtcaaagaactgactcccgatctcgaatcaaaagt 34378126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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