View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_7 (Length: 620)
Name: NF0611_low_7
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 4e-83; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 231 - 468
Target Start/End: Complemental strand, 2693574 - 2693345
Alignment:
| Q |
231 |
tacccaaaaagcaggaagagcacataacattttcaaaggccccccatcagcacctctcatttccatgtacttcttcagcctgacctgcataaaaattaat |
330 |
Q |
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| T |
2693574 |
tacccaaaaagcaggcaaagcacataacatattcaaaggccccccatcagcacctctcatttccatgtacttctttagcctgacctgcataaaaattaat |
2693475 |
T |
|
| Q |
331 |
acatgtcctacttaacttagtcttagtgttctgaaattatatagttaaaaatgtaacaccgagactttcggcatttcagattggatgtgtcaatgtgtgt |
430 |
Q |
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| T |
2693474 |
acatgtcctacttaacttagtcttagtgtactgaaattatatggttagaaatgtaacactgagactttcggtatttcagattggat--------gtgtgc |
2693383 |
T |
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| Q |
431 |
caagtgtctgacacatattggtgtcgacattgaacatt |
468 |
Q |
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| T |
2693382 |
aaagtgtccgacacatattggtgttgacattgaacatt |
2693345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 454 - 612
Target Start/End: Complemental strand, 2693326 - 2693166
Alignment:
| Q |
454 |
tcgacattgaacatttgacacaagtgattactttcaactacttctattatggatactatctttgttgtgtctg----atgtccatatctatgtcaatgtt |
549 |
Q |
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| T |
2693326 |
tcgacattcaacatt-gacacaagtgattacattcagttacttctatttttgataataacaatgttgtgtctgtccaatgtccatatctatgccaatgtt |
2693228 |
T |
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| Q |
550 |
tcatagattgatagtgatatgcaaactatatgcatgtctcaataacctcaggaaatattgttg |
612 |
Q |
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| T |
2693227 |
tcatagatttatagtgatatgtaaaccatatgcatgtctcaat-acctcaggaaatattgttg |
2693166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 91 - 200
Target Start/End: Complemental strand, 2693682 - 2693573
Alignment:
| Q |
91 |
acatgccttgttcaccaaggcaattaagtttcacaacctttgatccttaa-ctcaagttatatgcactataattctaaagacaaattaaacccaatttta |
189 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| |||||||||||| ||||||| |
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| T |
2693682 |
acatgccttgttcaacaaggcaattaagtttcacaacctttgatccttaatctc-agttatatgcattataattctatagacaaattaaagttaatttta |
2693584 |
T |
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| Q |
190 |
caatgtatata |
200 |
Q |
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|||| |||||| |
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| T |
2693583 |
caatatatata |
2693573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 299
Target Start/End: Complemental strand, 2685689 - 2685614
Alignment:
| Q |
224 |
gatgaattacccaaaaagcaggaagagcacataacattttcaaaggccccccatcagcacctctcatttccatgta |
299 |
Q |
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| T |
2685689 |
gatgaattacccaaaaagctggtggagcacatagcatgctctgagggaccacatcagcacctctcatttccatgta |
2685614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 317
Target Start/End: Original strand, 40924315 - 40924400
Alignment:
| Q |
232 |
acccaaaaagcaggaagagcacataacattttcaaaggccccccatcagcacctctcatttccatgtacttcttcagcctgacctg |
317 |
Q |
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|||||||| || || | |||||||||| || || ||||||| ||||||||||||||||| |||| ||| |||| ||||| ||||| |
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| T |
40924315 |
acccaaaatgctggtaaagcacataaccttctccaaggccctccatcagcacctctcatctccaaatacctctttagcctaacctg |
40924400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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