View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_70 (Length: 267)
Name: NF0611_low_70
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_70 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 20686091 - 20686328
Alignment:
| Q |
1 |
tggttaaatgtgaattgagcaactagtacatacgagcataaaactaattgatctaataagtattacttgaatcccagcatggctgttcagataaaaatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20686091 |
tggttaaatgtgaattgagcaactagtacatacgagcataaaactaattgatctaataagtattacttgaatcccagcatggctgttcagataaaaatca |
20686190 |
T |
|
| Q |
101 |
aattccctgggatggcaaatggttgtgtctaccacagttcctttgacaaaatttcaaacnnnnnnntcagtacatatagataaattggaatgagaacaga |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20686191 |
aattccctgggatggcaaatggttgtatctaccacagttcctttgacaaaatttcaaacaaaaaaatcagtacatatagataaattggaatgagaacaga |
20686290 |
T |
|
| Q |
201 |
taccagttgtagggcaggcaagaaataaattgaaaaac |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
20686291 |
taccagttgtagggcaggcaagaaataaattgaaaaac |
20686328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 20661937 - 20662126
Alignment:
| Q |
1 |
tggttaaatgtgaattgagcaactagtacatacgagcataaaac--taattgatctaataagtattacttgaatcccagcatggctgttcagataaaaat |
98 |
Q |
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|||||||||| |||||||||||||||||||||||||||| || |||| || ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
20661937 |
tggttaaatgccaattgagcaactagtacatacgagcatataaagttaatggaactagtaagtattacttgaatcccagcatggctgttcagataaaaat |
20662036 |
T |
|
| Q |
99 |
caaattccctgggatggcaaatggttgtgtctaccacagttcctttgacaaaatttcaaacnnnnnnntcagtacatatagataaattgg |
188 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||| ||||||||||||||| |
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| T |
20662037 |
caaattccctgggatggcaaatggttgtgtcaaccacagttcctttgacaaaatttaaaagaacgtaatcagtaaatatagataaattgg |
20662126 |
T |
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