View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_73 (Length: 260)
Name: NF0611_low_73
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_73 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 29 - 259
Target Start/End: Complemental strand, 14539035 - 14538805
Alignment:
| Q |
29 |
acgtctgatacgtccaacatatcaatccaactgcagtgactgcatatcattgaaatcttaaaaacttacatttataagaaaacatttaatgactgtcaga |
128 |
Q |
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| T |
14539035 |
acgtccgatacgtccaacatatcaatccaactgcagtgactgcatatcattgaaatcttaaaaacttacatttataagaaaacatttaatgactgtcaga |
14538936 |
T |
|
| Q |
129 |
tacaaccagtttcccttttatttcagcaatatttccaactcaccatcagatagaacttttcaaggaagagcctctagaagacaaggtataactggacaac |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14538935 |
tacaaccagtttcccttttatttcagcaatatttccaactcaccatcagatagaacttttcaaggaagagcctctagaagacaaggtgtaactggacaac |
14538836 |
T |
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| Q |
229 |
tgattaactataattctcgttgttatgttaa |
259 |
Q |
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| T |
14538835 |
tgattaactataattctcgttgttatgttaa |
14538805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 14526680 - 14526588
Alignment:
| Q |
113 |
tttaatgactgtcagatacaaccagtttccct-tttatttcagcaatatttccaactcaccatcagatagaacttttcaaggaagagcctcta |
204 |
Q |
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||||||||| |||| |||| ||||| ||||| |||||||||||||| ||| ||||||| ||||||| ||| ||||||||||| |||||||| |
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| T |
14526680 |
tttaatgacagtcaaataccaccagagtccctgtttatttcagcaatgttttcaactcaacatcagactgaatttttcaaggaaaagcctcta |
14526588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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