View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_76 (Length: 251)
Name: NF0611_low_76
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_76 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 24286143 - 24285908
Alignment:
| Q |
16 |
acaagaattattatctaaaatgttacgccaaagcaatctttggttggtaatctattatgaaatagacgccaagcaaacgttaattctatagaggacggaa |
115 |
Q |
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| T |
24286143 |
acaagaattattatctaaaatgttatgccaaagcaatctttggttggtaatctattatgaaatagacgccaagcaaacgttaattctatagaggacggaa |
24286044 |
T |
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| Q |
116 |
gcatagaaatcaattccaccgcaaacaaggaaatccaagtagtagtgaattttcctatagcctctaaccaagacgtgttcaaattctaaaaattggacat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24286043 |
gcatagaaatcaattccaccgcaaacaaggaaatccaagtagtagtgaattttcttatagcctctaaccaagacgtgttcaaattctaaaaattggacat |
24285944 |
T |
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| Q |
216 |
aaactcagcaaggagaggtagtgtccaagattaccc |
251 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
24285943 |
aaactcagcaaggagaggtagtgtccaagattaccc |
24285908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 44889446 - 44889528
Alignment:
| Q |
14 |
agacaagaattattatctaaaatgttacgccaaagcaat----ctttggttggtaatctattatgaaatagacgccaagcaaa |
92 |
Q |
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| T |
44889446 |
agacaagaattattatctaaaacgttgcgccaaagcaagttacctttggttggtaatctattatgaaatagacgccaagcaaa |
44889528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 29642444 - 29642485
Alignment:
| Q |
51 |
atctttggttggtaatctattatgaaatagacgccaagcaaa |
92 |
Q |
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| T |
29642444 |
atctttggttggtaatctattccgaaatagacgccaagcaaa |
29642485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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