View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0611_low_79 (Length: 251)
Name: NF0611_low_79
Description: NF0611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0611_low_79 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 40052667 - 40052426
Alignment:
| Q |
1 |
atgagttgacaaaaactacaacaacacatttttgggggaaaaatgtgtttgaacccagcctactggcaaatgacnnnnnnnncatgcatggaactaatta |
100 |
Q |
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| T |
40052667 |
atgagttgacaaaaactacaacaacacatttttgggggaaaaatgtgtttgaacccagcctactggcaaatgacaaaaaaaacatgcatggaactaatta |
40052568 |
T |
|
| Q |
101 |
caacaaccaccaatccatcatgttagtcataatttctatttttgcagaattgattctccaatgagcaaatcagtgacaagtaagtagaaattagcaaaaa |
200 |
Q |
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| T |
40052567 |
caacaaccaccaatccatcatgttagtcataatttctatttttgcagaattgattctccaatgtgcaaatcagtgacaagtaagtagaaattagcaaaaa |
40052468 |
T |
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| Q |
201 |
taatgagatgatcatggcagcttcaagatgcataacctatga |
242 |
Q |
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| T |
40052467 |
taatgagatgatcatggcagctacaagatgcataacctatga |
40052426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 236
Target Start/End: Complemental strand, 40046041 - 40045910
Alignment:
| Q |
101 |
caacaaccaccaatccatcatgttagtcataatttctatttttgcagaattgattctccaatgagcaaatcagtgacaagtaagtagaaattagcaaaaa |
200 |
Q |
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||||| ||||| ||||||| |||||| |||||||||| ||||| ||||||| ||||||| ||||||||||||||||| |||||||||||||||| | |
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| T |
40046041 |
caacatccaccgatccatcttgttagacataatttctgcttttgtagaattggttctccagtgagcaaatcagtgaca----agtagaaattagcaaata |
40045946 |
T |
|
| Q |
201 |
taatgagatgatcatggcagcttcaagatgcataac |
236 |
Q |
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| T |
40045945 |
tagtgagatgctcacggcagctacaagatgcataac |
40045910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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