View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0612_high_4 (Length: 321)
Name: NF0612_high_4
Description: NF0612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0612_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 38914341 - 38914415
Alignment:
| Q |
232 |
tcatatatacttgtgaggggagcctcctagttttagttattctggactcatgtatgctcccggtccttattatat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38914341 |
tcatatatacttgtgaggggagcctcctagttttagttattctgaactcatgtatgctcccggtccttattatat |
38914415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 38913874 - 38913936
Alignment:
| Q |
139 |
ggatcttagataatgtgaattaattaaaaataactgaagataatgaatagacatgggaagaag |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38913874 |
ggatcttagataatgtgaattaattaaaaataactgaagataatgaatagacatgggaagaag |
38913936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 67
Target Start/End: Original strand, 38913810 - 38913841
Alignment:
| Q |
36 |
agctttgtaaataatagctaaatgtaaaagcc |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38913810 |
agctttgtaaataatagctaaatgtaaaagcc |
38913841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2023 times since January 2019
Visitors: 3811