View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0612_high_8 (Length: 218)
Name: NF0612_high_8
Description: NF0612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0612_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 46256691 - 46256880
Alignment:
| Q |
1 |
aaattcattaatatctcacctcgtgttgtgcttgctgaatgtcaccattgagagctcttgctccatacaacaactctgcaagctgagatgctgattcctt |
100 |
Q |
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| T |
46256691 |
aaattcattaatatctcacctcacgttgtgcttgctgaatgtcaccattgagagctcttgctccatgcaacaactctgcaagctgagatgctgattcctt |
46256790 |
T |
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| Q |
101 |
tgtctcagtgaatataattgtttgaccttcactgaattagaacagtgtagcgaaacaatcaagatttaaatttcacatgaagatttatct |
190 |
Q |
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| T |
46256791 |
tgtctcagtaaatataattgtttgaccttcactgaattagaacagtgtagcaaaacaatcaagatttaaattccacaagaagatttatct |
46256880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 4 - 189
Target Start/End: Original strand, 46247060 - 46247245
Alignment:
| Q |
4 |
ttcattaatatctcacctcgtgttgtgcttgctgaatgtcaccattgagagctcttgctccatacaacaactctgcaagctgagatgctgattcctttgt |
103 |
Q |
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|||||||||| ||||||||| |||||||||| || |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46247060 |
ttcattaatagctcacctcgcgttgtgcttgttgtatgtcaccatggagagctcttgctccaggcaacaactctgcaagctgagatgctgattcctttgt |
46247159 |
T |
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| Q |
104 |
ctcagtgaatataattgtttgaccttcactgaattagaacagtgtagcgaaacaatcaagatttaaatttcacatgaagatttatc |
189 |
Q |
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| T |
46247160 |
ctcagtgaatataattgttcgaccttcactgaattagaacagtgtaccgaaacaatgaagatttaaattcaacaggaagatttatc |
46247245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 20121535 - 20121641
Alignment:
| Q |
15 |
ctcacctcgtgttgtgcttgctgaatgtcaccattgagagctcttgctccatacaacaactctgcaagctgagatgctgattcctttgtctcagtgaata |
114 |
Q |
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|||||||| |||||| ||||| |||||||||| |||||||||||||||| |||||| | ||||||| ||| || || |||||| |||| | |||| |
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| T |
20121535 |
ctcacctcacgttgtgactgctgtatgtcaccatggagagctcttgctccaggcaacaatccagcaagctcagaagcagactcctttttctccgcaaata |
20121634 |
T |
|
| Q |
115 |
taattgt |
121 |
Q |
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||||||| |
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| T |
20121635 |
taattgt |
20121641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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