View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0612_low_1 (Length: 725)
Name: NF0612_low_1
Description: NF0612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0612_low_1 |
 | |
|
| [»] scaffold0238 (1 HSPs) |
| | |
|
| [»] scaffold0097 (2 HSPs) |
| | |
|
| [»] scaffold0194 (2 HSPs) |
| | |
|
| [»] scaffold0337 (1 HSPs) |
| | |
|
| [»] scaffold0544 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 7 - 620
Target Start/End: Original strand, 8402156 - 8402773
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg------ctttatgttttagtgagagaaatgtttgaagcaaat |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| || |
|
|
| T |
8402156 |
gaatcatcatgtttggccggaaaagatgaagactcatctgaattgtagagagagagagagagagctttatgttttagtgagagaaatgtttgaagcagat |
8402255 |
T |
|
| Q |
101 |
gaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttcc |
200 |
Q |
| |
|
||||||||||||||| ||||||||| | ||| |||||||||| |||||||||| ||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
8402256 |
gaagtttgatttggtttagtttgagaaacctaggattattacatgtgtacactagatctgatggttatgaagtgtttatg-------cataaaaatttcc |
8402348 |
T |
|
| Q |
201 |
ttatccaccgtaacttttgccaatgtttctctcactttaagaaaaggatcaatcaagctacttcaagtaactacgtagtcactagacaaagtacataata |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| |
|
|
| T |
8402349 |
ttatccaccataacttttgccaatgtttctctcactttaagaaaaggatcaatcaagccacttcaagtaacta----gtaactagacaaagtacataata |
8402444 |
T |
|
| Q |
301 |
agtgaaaatcaaatattcgactagtttaattttatatatcaaattgcccacgataaatttctcataaaggatattttcatatgtaaaaggcattaaattt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8402445 |
agtgaaaatcaaatattcgactagtttaattttatatatcaaattgcccacgataaatttctcataaaggatattttcatatgtaaaaggcattaaattt |
8402544 |
T |
|
| Q |
401 |
acattattttgaccataaa---------caatagccttttgtacgcacaaaattgtagttagagacagagaaatgttggttgtataaaatatgctaaatt |
491 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8402545 |
acattattttgaccataaaggatatatcaaataaccttttgtacccacaaaattgtagttagagacagagaaatgttggttgtataaaatatgctaaatt |
8402644 |
T |
|
| Q |
492 |
gccacttgtttataaagagaggaaacttgtttgattcatgaatgaagatacccctcatattaagagagtcttgaacaaaatacatagagatatatgcgaa |
591 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8402645 |
gccacttgtttttaaagagaggaaacttgtttgattcatgaatgaagatacccctcatattaagagagtcttgaacaaaatacatagagatatatgcgaa |
8402744 |
T |
|
| Q |
592 |
gcgttcatgaccaacaaataccaaggtcc |
620 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8402745 |
gcgttcatgaccaacaaataccaaggtcc |
8402773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 22348257 - 22348039
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctttatgttttagtgagagaaatgtttgaagcaaatga |
102 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22348257 |
gaatcatcatgtgtggccggaagagatgaagactcatatgaattgtagagagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatga |
22348158 |
T |
|
| Q |
103 |
agtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttcctt |
202 |
Q |
| |
|
||||||||||||||||||||||| || ||| ||||||||||||||||||||| || |||||||| ||||||||||| | |||| ||||| |||||||| |
|
|
| T |
22348157 |
agtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatatgatggttgtgaagtgtttatgcgcggtgcataaggatttcctt |
22348058 |
T |
|
| Q |
203 |
atccaccgtaacttttgcc |
221 |
Q |
| |
|
|| |||| ||||||||||| |
|
|
| T |
22348057 |
atgcaccataacttttgcc |
22348039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 179825 - 179651
Alignment:
| Q |
8 |
aatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctttatgttttagtgagagaaatgtttgaagcaaatgaa |
103 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
179825 |
aatcatcatgtgtggccgaaagagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaaatgttttaagcaaatgaa |
179726 |
T |
|
| Q |
104 |
gtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
|||||||||||||||||||||| || | ||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
179725 |
gtttgatttggtgtagtttgagaagcttgggattattacacgtgtacactagatctgatggttgtgaagtgttta |
179651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 47 - 221
Target Start/End: Complemental strand, 18056960 - 18056784
Alignment:
| Q |
47 |
aattgtagagagag--agtgctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacac |
144 |
Q |
| |
|
|||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||| |
|
|
| T |
18056960 |
aattgtagagagagggagagttttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacac |
18056861 |
T |
|
| Q |
145 |
gtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc |
221 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| | ||||| ||||| |||||||||| |||| ||||||||||| |
|
|
| T |
18056860 |
gtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgcc |
18056784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 64 - 178
Target Start/End: Original strand, 23319993 - 23320107
Alignment:
| Q |
64 |
gctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatg |
163 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
23319993 |
gctttatgttttagtgagagaaatgtttaaagcaaatgaagtttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatctgatg |
23320092 |
T |
|
| Q |
164 |
gttatgaagtgttta |
178 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
23320093 |
gttgtgaagtgttta |
23320107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 47 - 221
Target Start/End: Complemental strand, 45889774 - 45889596
Alignment:
| Q |
47 |
aattgtagagagagagtg----ctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattac |
142 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
45889774 |
aattgtagagagagagggagaactttatgttttagtgagagaaatgtttgaaggaaatgaaatttgatttggtgtagtttgagaagcctaagattattac |
45889675 |
T |
|
| Q |
143 |
acgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc |
221 |
Q |
| |
|
|| |||| |||| ||||||||||| | || |||||| | ||||| |||| ||||||||||| |||| || |||||||| |
|
|
| T |
45889674 |
acatgtatactagatctgatggttgtaaaatgtttatgcacggtggataagaatttccttatgcaccataccttttgcc |
45889596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 30802535 - 30802439
Alignment:
| Q |
82 |
agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| |||| |||||| |
|
|
| T |
30802535 |
agaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaagattattacacgtgtacactagatctgatggttgtgaaatgttta |
30802439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 37639457 - 37639385
Alignment:
| Q |
106 |
ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
37639457 |
ttgatttggtgtagtttgagaagtctataattattacacgtgtacactagatctgatggttgtgaagtgttta |
37639385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 106 - 221
Target Start/End: Complemental strand, 16115966 - 16115851
Alignment:
| Q |
106 |
ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatc |
205 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||||||||||||| || || |||||||| ||||||||||| | ||||| ||||| |||||||||| |
|
|
| T |
16115966 |
ttgatttggtgtagtttaagaagtcttggattattacacgtgtacattagatttgatggttgtgaagtgtttatgcacggtgcataaggatttccttatg |
16115867 |
T |
|
| Q |
206 |
caccgtaacttttgcc |
221 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
16115866 |
catgataacttttgcc |
16115851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 35198131 - 35198203
Alignment:
| Q |
106 |
ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
||||||| ||||||||||| |||||| ||||||||||||||||||||| ||||||||| | ||||||||||| |
|
|
| T |
35198131 |
ttgattttgtgtagtttgaaaagtctaggattattacacgtgtacactagatctgatggctgtgaagtgttta |
35198203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 23319901 - 23319941
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctga |
47 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23319901 |
gaatcatcatgtgtggccggaagagatgaagactcatctga |
23319941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 18057031 - 18056991
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctga |
47 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
18057031 |
gaatcatcatgtgtggccggaagagataaagactcatctga |
18056991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 45889844 - 45889805
Alignment:
| Q |
8 |
aatcatcatgtgtggccggaaaagatgaagactcatctga |
47 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
45889844 |
aatcatcatttgtggccggaagagatgaagactcatctga |
45889805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 6e-79; HSPs: 16)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 51362284 - 51362503
Alignment:
| Q |
5 |
cagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtgc---tttatgttttagtgagagaaatgtttgaagcaaatg |
101 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
51362284 |
cagaatcatcatgtgtggccggaagagatgaagactcatctgaattgtagagagagagggaaagtttatgttttagtgagagaaatgtttgaagcaaatg |
51362383 |
T |
|
| Q |
102 |
aagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttcct |
201 |
Q |
| |
|
|||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||||| ||||||| |
|
|
| T |
51362384 |
aagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactaaatctgatggttgtgaagtgtttatgcacggtgcataaggatttcct |
51362483 |
T |
|
| Q |
202 |
tatccaccgtaacttttgcc |
221 |
Q |
| |
|
||| |||| ||||||||||| |
|
|
| T |
51362484 |
tatgcaccataacttttgcc |
51362503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 19385166 - 19385380
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtgctttatgttttagtgagagaaatgtttgaagcaaatgaagtt |
106 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
19385166 |
gaatcatcatctgtggccggaagagatgaagactcatctgaattgtagagagggagagttttatgttttagtgagggaaatgattgaagcaaatgaagtt |
19385265 |
T |
|
| Q |
107 |
tgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatcc |
206 |
Q |
| |
|
||||||| ||||||||||| || ||| |||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||||| |||||||||| | |
|
|
| T |
19385266 |
tgatttgatgtagtttgagaagcctagaattattacacgtgtacactaaatctgatggttgtgaagtgtttatgcacggtgcataaggatttccttatgc |
19385365 |
T |
|
| Q |
207 |
accgtaacttttgcc |
221 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
19385366 |
accataacttttgcc |
19385380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 52987497 - 52987698
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctttatgttttagtgagagaaatgtttgaagcaaatga |
102 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
52987497 |
gaatcatcatgtgtggccgaaagagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaaatatttgaagcaaatga |
52987596 |
T |
|
| Q |
103 |
agtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttcctt |
202 |
Q |
| |
|
||||||||||||||||||||||| || ||| ||||||||||||||||||||| ||||||||||| ||||||||||| | ||||| ||||| |||||||| |
|
|
| T |
52987597 |
agtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaggatttcctt |
52987696 |
T |
|
| Q |
203 |
at |
204 |
Q |
| |
|
|| |
|
|
| T |
52987697 |
at |
52987698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 7 - 219
Target Start/End: Complemental strand, 50754222 - 50754008
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagag--agtgctttatgttttagtgagagaaatgtttgaagcaaatgaag |
104 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
50754222 |
gaatcatcatgtgtggtcggaagagattaagactcatctgaattgtagagagagggagagctttatgttttagtgagagaagtgtttgaatcaaatgaag |
50754123 |
T |
|
| Q |
105 |
tttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttat |
204 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||||||||||||||||||| ||||||||||| ||||||||||| | ||||| ||||| |||||||||| |
|
|
| T |
50754122 |
tttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaggatttccttat |
50754023 |
T |
|
| Q |
205 |
ccaccgtaacttttg |
219 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
50754022 |
gtaccataacttttg |
50754008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 7045148 - 7045365
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctttatgttttagtgagagaaatgtttgaagcaaatga |
102 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7045148 |
gaatcatcatgtgtggctggaagagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaaatgtttgaagcaaat-a |
7045246 |
T |
|
| Q |
103 |
agtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttcctt |
202 |
Q |
| |
|
||||||||||| |||||| |||| || ||| ||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
7045247 |
agtttgatttgatgtagtctgagaagcctacgattattacacgtgtacactagatctgatggttgtgaagtgtttatacacggtgcataagaatttcctt |
7045346 |
T |
|
| Q |
203 |
atccaccgtaacttttgcc |
221 |
Q |
| |
|
|| |||| ||||||||||| |
|
|
| T |
7045347 |
atgcaccataacttttgcc |
7045365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 64 - 221
Target Start/End: Complemental strand, 8718258 - 8718101
Alignment:
| Q |
64 |
gctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatg |
163 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| || || ||| ||||||||||| ||||||||| |||||||| |
|
|
| T |
8718258 |
gctttatgttttagtgagagaaatgttttaaacaaatgaagtttgatttggtgtagtttaagaagcctaggattattacacatgtacactagatctgatg |
8718159 |
T |
|
| Q |
164 |
gttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc |
221 |
Q |
| |
|
||| |||||| |||| ||||||| ||||| |||||||||| |||| ||||||||||| |
|
|
| T |
8718158 |
gttgtgaagtatttatgtacggtgcataaggatttccttatgcaccataacttttgcc |
8718101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 64 - 221
Target Start/End: Complemental strand, 9070145 - 9069988
Alignment:
| Q |
64 |
gctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatg |
163 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| || || ||| ||||||||||| ||||||||| |||||||| |
|
|
| T |
9070145 |
gctttatgttttagtgagagaaatgttttaaacaaatgaagtttgatttggtgtagtttaagaagcctaggattattacacatgtacactagatctgatg |
9070046 |
T |
|
| Q |
164 |
gttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc |
221 |
Q |
| |
|
||| |||||| |||| ||||||| ||||| |||||||||| |||| ||||||||||| |
|
|
| T |
9070045 |
gttgtgaagtatttatgtacggtgcataaggatttccttatgcaccataacttttgcc |
9069988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 53 - 192
Target Start/End: Complemental strand, 39099365 - 39099226
Alignment:
| Q |
53 |
agagagagagtgctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacac |
152 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| || ||| ||||||||||||||||||| |
|
|
| T |
39099365 |
agagagggagagctttatgttttagtgagagaaatgttttaaacaaatgaagtttgatttagtgtagtttgagaagcctaggattattacacgtgtacac |
39099266 |
T |
|
| Q |
153 |
taaatctgatggttatgaagtgtttacgtacggtacataa |
192 |
Q |
| |
|
|| ||||||||||| |||| | |||| | ||||| ||||| |
|
|
| T |
39099265 |
tagatctgatggttgtgaaatatttatgcacggtgcataa |
39099226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 84 - 217
Target Start/End: Original strand, 16277342 - 16277475
Alignment:
| Q |
84 |
aaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtac |
183 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| || || ||||||||||||||||||||| || |||||||| ||||||||||| | || |
|
|
| T |
16277342 |
aaatgtttgaaacaaatgaagtttgatttggtgtagtttgagaagcgtaggattattacacgtgtacactagatatgatggttgtgaagtgtttatgcac |
16277441 |
T |
|
| Q |
184 |
ggtacataaaaatttccttatccaccgtaacttt |
217 |
Q |
| |
|
||| |||||| |||||||||| |||| ||||||| |
|
|
| T |
16277442 |
ggtgcataaagatttccttatgcaccataacttt |
16277475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 31852323 - 31852242
Alignment:
| Q |
8 |
aatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctttatgttttagtgagagaa |
85 |
Q |
| |
|
|||| ||||||||| || ||| ||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
31852323 |
aatcgtcatgtgtgccctgaagagatgaagactcatctgaactgtagagagagagggagaactttatgttttagtgagagaa |
31852242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 8718358 - 8718318
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctga |
47 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8718358 |
gaatcatcatgtgtggccggaagagatgaagactcatctga |
8718318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 9070245 - 9070205
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctga |
47 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9070245 |
gaatcatcatgtgtggccggaagagatgaagactcatctga |
9070205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 23699443 - 23699371
Alignment:
| Q |
106 |
ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
|||||||| |||||||||| || ||| |||||||||||||||||| || || |||||||| ||||||||||| |
|
|
| T |
23699443 |
ttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgttta |
23699371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 23717898 - 23717826
Alignment:
| Q |
106 |
ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
|||||||| |||||||||| || ||| |||||||||||||||||| || || |||||||| ||||||||||| |
|
|
| T |
23717898 |
ttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgttta |
23717826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 23736354 - 23736282
Alignment:
| Q |
106 |
ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
|||||||| |||||||||| || ||| |||||||||||||||||| || || |||||||| ||||||||||| |
|
|
| T |
23736354 |
ttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgttta |
23736282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 17627210 - 17627253
Alignment:
| Q |
135 |
attattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
17627210 |
attattacacgtgtacactagatctgatggttgtgaagtgttta |
17627253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 1e-73; HSPs: 16)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 7058335 - 7058114
Alignment:
| Q |
4 |
ccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctttatgttttagtgagagaaatgtttgaagcaaa |
99 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7058335 |
ccagaatcatcatgtgtggccgaaagagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaagtgtttgaagcaaa |
7058236 |
T |
|
| Q |
100 |
tgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttc |
199 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||| ||||||| ||||||||||| | ||||| ||||| ||||| |
|
|
| T |
7058235 |
tgaagtttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatcggatggttgtgaagtgtttatgcacggtgcataagtatttc |
7058136 |
T |
|
| Q |
200 |
cttatccaccgtaacttttgcc |
221 |
Q |
| |
|
||||| |||| ||||||||||| |
|
|
| T |
7058135 |
cttatgcaccataacttttgcc |
7058114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 4836548 - 4836762
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctttatgttttagtgagagaaatgtttgaagcaaatga |
102 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4836548 |
gaatcatcatgtgtggccggaagagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagataaatgtttgaagcaaatga |
4836647 |
T |
|
| Q |
103 |
agtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttcctt |
202 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||||||||||||||||| ||||||||||| ||||||||||| | ||||| ||||| ||||| || |
|
|
| T |
4836648 |
agtttgatttggtgtagtttgaaaagcttaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataagcatttcttt |
4836747 |
T |
|
| Q |
203 |
atccaccgtaacttt |
217 |
Q |
| |
|
|| |||| ||||||| |
|
|
| T |
4836748 |
atgcaccataacttt |
4836762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 7 - 217
Target Start/End: Original strand, 4841993 - 4842207
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctttatgttttagtgagagaaatgtttgaagcaaatga |
102 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4841993 |
gaatcatcatgtgtggccggaagagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagataaatgtttgaagcaaatga |
4842092 |
T |
|
| Q |
103 |
agtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttcctt |
202 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||||||||||||||||| ||||||||||| ||||||||||| | ||||| ||||| ||||| || |
|
|
| T |
4842093 |
agtttgatttggtgtagtttgaaaagcttaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataagcatttcttt |
4842192 |
T |
|
| Q |
203 |
atccaccgtaacttt |
217 |
Q |
| |
|
|| |||| ||||||| |
|
|
| T |
4842193 |
atgcaccataacttt |
4842207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 4 - 192
Target Start/End: Complemental strand, 8550725 - 8550533
Alignment:
| Q |
4 |
ccagaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctttatgttttagtgagagaaatgtttgaagcaaa |
99 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8550725 |
ccagaatcatcatgtgtggccgtaagagatgaagactcatctgaattgtagagaaagagggagaactttatgttttagtgagagaaatgtttgaagcaaa |
8550626 |
T |
|
| Q |
100 |
tgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataa |
192 |
Q |
| |
|
||||||||||||||||||| |||||| || || ||||||||||||||||||||| ||||||||||| ||||||||||| | ||||| ||||| |
|
|
| T |
8550625 |
tgaagtttgatttggtgtaatttgagaagcttatgattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa |
8550533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 47 - 223
Target Start/End: Original strand, 32987334 - 32987512
Alignment:
| Q |
47 |
aattgtagagagag--agtgctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacac |
144 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||| |
|
|
| T |
32987334 |
aattgtagagagagggagagctttatgttttagttagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacac |
32987433 |
T |
|
| Q |
145 |
gtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgccaa |
223 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| | ||||| ||||| |||||||||| |||| ||||||||||||| |
|
|
| T |
32987434 |
gtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgccaa |
32987512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 53 - 221
Target Start/End: Complemental strand, 39022143 - 39021975
Alignment:
| Q |
53 |
agagagagagtgctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacac |
152 |
Q |
| |
|
|||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||| ||||||| |
|
|
| T |
39022143 |
agagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacatgtacac |
39022044 |
T |
|
| Q |
153 |
taaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc |
221 |
Q |
| |
|
|| |||||||| || ||||||||||| | ||||| ||||| |||||||||| |||| ||||||||||| |
|
|
| T |
39022043 |
tagatctgatgattgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgcc |
39021975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 2750235 - 2750101
Alignment:
| Q |
17 |
gtgtggccggaaaagatgaagactcatctgaattgtagagagag------agtgctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgat |
110 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
2750235 |
gtgtggccggaagagatgaagactcatctgaattgtagagagagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgat |
2750136 |
T |
|
| Q |
111 |
ttggtgtagtttgaggagtctaagattattacacg |
145 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||| |
|
|
| T |
2750135 |
ttggtgtagtttgagaagtctatgattattacacg |
2750101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 53 - 221
Target Start/End: Original strand, 15260748 - 15260917
Alignment:
| Q |
53 |
agagagagagtgctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacac |
152 |
Q |
| |
|
|||||| ||| | ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| || || |||||||| |||||||||| |
|
|
| T |
15260748 |
agagagggagagttttatattttagtgagagaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagccttggattattaaacgtgtacac |
15260847 |
T |
|
| Q |
153 |
taaatctgatggttatgaagtgtttacgtacggtacataa-aaatttccttatccaccgtaacttttgcc |
221 |
Q |
| |
|
|| || |||||||| ||||||||||| | ||||| ||||| || ||||||| |||| ||||||||||| |
|
|
| T |
15260848 |
tagatttgatggttgtgaagtgtttatgcacggtgcataaggaaaatccttatgcaccataacttttgcc |
15260917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 7614207 - 7614111
Alignment:
| Q |
82 |
agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
7614207 |
agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctatgattattacacgtgtacattagatctgatggttgtgaagtgttta |
7614111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 1208917 - 1208829
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagaga--gagtgctttatgttttagtgagagaaatgtttga |
93 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
1208917 |
gaatcatcatgtgtggccgcaagagatgaagactcatctgaattgtagagagagggagagctttatgttttagtgagagaaatgtttga |
1208829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 39658390 - 39658463
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagaga--gagtgctttatgttttagt |
78 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
39658390 |
gaatcatcatgtgtggccggaagagatgaagactcatttgaattgtagagagagggagagctttatgttttagt |
39658463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 15181906 - 15181834
Alignment:
| Q |
106 |
ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| || ||||||||||| |
|
|
| T |
15181906 |
ttgatttggtgtagtttgagaaacctaagattattacacgtgtacactagatctgatgcttgtgaagtgttta |
15181834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 1208796 - 1208708
Alignment:
| Q |
134 |
gattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcca |
222 |
Q |
| |
|
||||||||||||||||||||| |||| |||||| | ||||||||| | ||||| ||||| |||||||||| |||| |||||||||||| |
|
|
| T |
1208796 |
gattattacacgtgtacactagatcttatggttgtaaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgcca |
1208708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 39022224 - 39022186
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatct |
45 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39022224 |
gaatcatcatgtgtggccggaagagatgaagactcatct |
39022186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 15260666 - 15260707
Alignment:
| Q |
6 |
agaatcatcatgtgtggccggaaaagatgaagactcatctga |
47 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
15260666 |
agaatcatcatatgtggccggaagagatgaagactcatctga |
15260707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 42433768 - 42433701
Alignment:
| Q |
154 |
aaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc |
221 |
Q |
| |
|
||||||||||||| ||||||| ||| | ||||| ||||| |||||||||| |||| ||||||||||| |
|
|
| T |
42433768 |
aaatctgatggttgtgaagtgcttatgcacggtgcataaggatttccttatgcaccataacttttgcc |
42433701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 6e-73; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 28070010 - 28070218
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtgctttatgttttagtgagagaaatgtttgaagcaaatgaagtt |
106 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28070010 |
gaatcatcatgtgtggccggaagagatgaagactcatctgaattgtagagag------ctttatgttttagtgagagaaatgtttgaagcaaatgaagtt |
28070103 |
T |
|
| Q |
107 |
tgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatcc |
206 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| ||| ||||||||||| | ||||| ||||| |||||||||| | |
|
|
| T |
28070104 |
tgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatctgatagttgtgaagtgtttatgcacggtgcataaggatttccttatgc |
28070203 |
T |
|
| Q |
207 |
accgtaacttttgcc |
221 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
28070204 |
accataacttttgcc |
28070218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 22 - 178
Target Start/End: Original strand, 2826931 - 2827089
Alignment:
| Q |
22 |
gccggaaaagatgaagactcatctgaattgtagagagag--agtgctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtag |
119 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2826931 |
gccggaagagatgaagactcatttgaattgtagagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtag |
2827030 |
T |
|
| Q |
120 |
tttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
|||||| || ||||||| ||||||||||||||||| ||||||||||| | ||||||||| |
|
|
| T |
2827031 |
tttgagaagcctaagataattacacgtgtacactagatctgatggttgtaaagtgttta |
2827089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 64 - 219
Target Start/End: Complemental strand, 13362927 - 13362772
Alignment:
| Q |
64 |
gctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatg |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||| ||||||||||||| ||||||| |||||||| |
|
|
| T |
13362927 |
gctttatgttttagtgagagaaatgtttgaagcaaatgaattttgatttggtgtagtttgagaagcctatgattattacacgtatacactagatctgatg |
13362828 |
T |
|
| Q |
164 |
gttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttg |
219 |
Q |
| |
|
||| ||||||||||| | ||||| ||||| |||||||||| |||| ||||||||| |
|
|
| T |
13362827 |
gttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttg |
13362772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 53 - 222
Target Start/End: Original strand, 23335603 - 23335773
Alignment:
| Q |
53 |
agagagagagtgctttatgtttt-agtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtaca |
151 |
Q |
| |
|
|||||| ||| |||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||| || ||| |||||||||||||||||| |
|
|
| T |
23335603 |
agagagggagagctttatgtttttagtgagagaaatgtttgatgcaaatgaactttgatttggtgtagtttgagaagcctatgattattacacgtgtaca |
23335702 |
T |
|
| Q |
152 |
ctaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcca |
222 |
Q |
| |
|
||| ||||||||||| |||| |||||| | ||||| |||| |||||||||| |||| |||||||||||| |
|
|
| T |
23335703 |
ctagatctgatggttgtgaaatgtttatgcacggtgcatacggatttccttatgcaccataacttttgcca |
23335773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 34329332 - 34329247
Alignment:
| Q |
8 |
aatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtgctttatgttttagtgagagaaatgtttga |
93 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34329332 |
aatcatcatgtgtggccggaagagatgaagacccatctgaattgtagagagagagagctttatgttttagtgagagaaatgtttga |
34329247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 18465506 - 18465578
Alignment:
| Q |
106 |
ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
18465506 |
ttgatttggtgtagtttgagaagtctaagattattacacgtgtacactagatctgatggttgtgaagtgttta |
18465578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 47 - 219
Target Start/End: Original strand, 25017121 - 25017280
Alignment:
| Q |
47 |
aattgtagagagag--agtgctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacac |
144 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||| | |||| |||||||||| |
|
|
| T |
25017121 |
aattgtagagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatga---------------agtttgagaaacctaaaattattacac |
25017205 |
T |
|
| Q |
145 |
gtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttg |
219 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| | ||||| ||||| |||||||||| |||| ||||||||| |
|
|
| T |
25017206 |
gtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttg |
25017280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 16668743 - 16668816
Alignment:
| Q |
105 |
tttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
16668743 |
tttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgttta |
16668816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 42512342 - 42512273
Alignment:
| Q |
53 |
agagagagagtgctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagttt |
122 |
Q |
| |
|
|||||| ||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42512342 |
agagagggagagctttaggttttagtgagagaaatgtttgaagtaaatgaagtttgatttggtgtagttt |
42512273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 34329214 - 34329127
Alignment:
| Q |
134 |
gattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc |
221 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||||||||| | ||||| |||||| |||||||||| |||| ||||||||||| |
|
|
| T |
34329214 |
gattattattcgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaagatttccttatgcaccataacttttgcc |
34329127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 8949003 - 8948933
Alignment:
| Q |
106 |
ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
|||||||||||||||||||| || ||| |||||| ||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
8949003 |
ttgatttggtgtagtttgagaagcctaggattat--cacgtgtacactaaatctgatagttttgaagtgttta |
8948933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 25017048 - 25017090
Alignment:
| Q |
5 |
cagaatcatcatgtgtggccggaaaagatgaagactcatctga |
47 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
25017048 |
cagaatcatcatgtgttgccggaagagatgaagactcatctga |
25017090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 23335520 - 23335560
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctga |
47 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
23335520 |
gaatcatcatgtgtggctggaagagatgaagactcatctga |
23335560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 9e-66; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 24737540 - 24737726
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagag--agtgctttatgttttagtgagagaaatgtttgaagcaaatgaag |
104 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24737540 |
gaatcatcatgtgtggccggaagagatgaagactcatctgaattgtagagagagggagagttttatgttttagtgagagaaatgtttgaagcaaatgaag |
24737639 |
T |
|
| Q |
105 |
tttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacata |
191 |
Q |
| |
|
|||||||||||||||||| || || ||| ||||||||||||||||||||| ||||||||||| ||||||||||| | ||||| |||| |
|
|
| T |
24737640 |
tttgatttggtgtagtttaagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcata |
24737726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 33346218 - 33346436
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctttatgttttagtgagagaaatgtttgaagcaaatga |
102 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33346218 |
gaatcatcatgtgtggccgaaagagatgaagactcatctgaattgtagagagagagggagaactttatgttttagtgagagaaatgtttgaagcaaacga |
33346317 |
T |
|
| Q |
103 |
agtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttcctt |
202 |
Q |
| |
|
||||||||||| |||||||||| || ||| |||||||||||||||||||| || |||||||| ||||||||||| | ||||| ||||| |||||||| |
|
|
| T |
33346318 |
agtttgatttgacgtagtttgagaagcctataattattacacgtgtacactagatttgatggttgtgaagtgtttatgcacggtgcataaggatttcctt |
33346417 |
T |
|
| Q |
203 |
atccaccgtaacttttgcc |
221 |
Q |
| |
|
|| |||| ||||||||||| |
|
|
| T |
33346418 |
atgcaccataacttttgcc |
33346436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 7 - 178
Target Start/End: Complemental strand, 877421 - 877251
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagag--agtgctttatgttttagtgagagaaatgtttgaagcaaatgaag |
104 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||| | |||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
877421 |
gaatcatcatgtgtggcctgaagagatgaagactcct---aattgtagagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaag |
877325 |
T |
|
| Q |
105 |
tttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
||||||||||||||||||||| || || |||||||| |||||||||| |||| |||||| ||||||||||| |
|
|
| T |
877324 |
tttgatttggtgtagtttgagaagcttatgattattatacgtgtacacctgatctaatggttgtgaagtgttta |
877251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 18611304 - 18611232
Alignment:
| Q |
106 |
ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
|||||||||||| ||||||| || ||| ||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
18611304 |
ttgatttggtgtggtttgagaagcctatgattattacacgtgtacactagatctgatggttgtgaagtgttta |
18611232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 29157341 - 29157245
Alignment:
| Q |
106 |
ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttcctt |
202 |
Q |
| |
|
|||||||||||||||||||| || ||| |||||||||||||||||||| ||||||||||| | ||||||||| | ||||| ||||| |||||||| |
|
|
| T |
29157341 |
ttgatttggtgtagtttgagaagcctagtattattacacgtgtacactagatctgatggttgtaaagtgtttatgcacggtgcataaggatttcctt |
29157245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 34399728 - 34399641
Alignment:
| Q |
134 |
gattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc |
221 |
Q |
| |
|
||||||||||||||||||||| |||||||| || ||||||||||| |||||| ||||| |||||||||| |||| ||||||||||| |
|
|
| T |
34399728 |
gattattacacgtgtacactagatctgatgattgtgaagtgtttatatacggtgcataaggatttccttatgcaccataacttttgcc |
34399641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 221
Target Start/End: Original strand, 15034920 - 15035040
Alignment:
| Q |
106 |
ttgatttggtgtagtttgagg-----agtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttcc |
200 |
Q |
| |
|
|||||||||||||||||||| || ||| ||||||||||| ||||||||| ||||||||||| |||| |||| | ||||| ||||| |||||| |
|
|
| T |
15034920 |
ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaatgatttatgcacggtgcataaggatttcc |
15035019 |
T |
|
| Q |
201 |
ttatccaccgtaacttttgcc |
221 |
Q |
| |
|
|||| |||| ||||||||||| |
|
|
| T |
15035020 |
ttatgcaccataacttttgcc |
15035040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 3e-65; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 6 - 221
Target Start/End: Complemental strand, 25193111 - 25192892
Alignment:
| Q |
6 |
agaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctttatgttttagtgagagaaatgtttgaagcaaatg |
101 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| | |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25193111 |
agaatcatcatgtgtggccggaagagatgaagactcgtatgaattgtagagagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatg |
25193012 |
T |
|
| Q |
102 |
aagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttcct |
201 |
Q |
| |
|
||||||||||||||||| |||||| || ||| |||||||||||||||||||| |||| |||||| ||||||||||| | ||||| ||||| ||||||| |
|
|
| T |
25193011 |
aagtttgatttggtgtaatttgagaagcctagaattattacacgtgtacactagatctaatggttgtgaagtgtttatgcacggtgcataaggatttcct |
25192912 |
T |
|
| Q |
202 |
tatccaccgtaacttttgcc |
221 |
Q |
| |
|
||| |||| ||||||||||| |
|
|
| T |
25192911 |
tatgcaccataacttttgcc |
25192892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 18297958 - 18298176
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtgc----tttatgttttagtgagagaaatgtttgaagcaaatga |
102 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||| |||||||||||||||| | ||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
18297958 |
gaatcatcatgtgtggtcggaagagatgaagactcatctaaattgtagagagagagggagagatttatgttttagtgagagaaacgcttgaagcaaatga |
18298057 |
T |
|
| Q |
103 |
agtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttcctt |
202 |
Q |
| |
|
||||||||||||||||||||||| || ||| ||||||||||||||||||||| ||||||||||| ||||||||||| | ||||| ||||| |||||||| |
|
|
| T |
18298058 |
agtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaggatttcctt |
18298157 |
T |
|
| Q |
203 |
atccaccgtaacttttgcc |
221 |
Q |
| |
|
|| |||| ||||||||||| |
|
|
| T |
18298158 |
atgcaccataacttttgcc |
18298176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 20709950 - 20709773
Alignment:
| Q |
47 |
aattgtagagagagagtg--ctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacac |
144 |
Q |
| |
|
|||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||| |
|
|
| T |
20709950 |
aattgtagagagagggagaactttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcgtaggattattacat |
20709851 |
T |
|
| Q |
145 |
gtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcca |
222 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| | ||||| |||| |||||||||| |||| |||||||||||| |
|
|
| T |
20709850 |
gtgtacactagatctgatggttgtgaagtgtttatgcacggtggataaggatttccttatgcaccataacttttgcca |
20709773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 4579673 - 4579763
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagaga----gagtgctttatgttttagtgagagaaatgtttga |
93 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
4579673 |
gaatcatcatgtgtggccggaagagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaaatgtttga |
4579763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 25995402 - 25995330
Alignment:
| Q |
106 |
ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
||||||||||||| |||||| || ||| ||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
25995402 |
ttgatttggtgtaatttgagtagcctaggattattacacgtgtacactaaatctgatggttgtgaagtattta |
25995330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 4281738 - 4281810
Alignment:
| Q |
106 |
ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
|||||||| ||||||||||| | ||| ||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
4281738 |
ttgatttgctgtagtttgagaaacctaggattattacacgtgtacactagatctgatggttgtgaagtgttta |
4281810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 14551297 - 14551382
Alignment:
| Q |
134 |
gattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgc |
220 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||| ||||||||||| | || || ||||| ||||||||||| |||| |||||||||| |
|
|
| T |
14551297 |
gattattacacatgtacactagatctgatggttgtgaagtgtttatgcac-gtgcataagaatttccttatgcaccataacttttgc |
14551382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 4579793 - 4579865
Alignment:
| Q |
131 |
taagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttcctta |
203 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| | ||||||||| | | ||| ||||| ||||||||| |
|
|
| T |
4579793 |
taagattattacacgtgtacactagatctgatggttgtaaagtgtttatgcatggtgcataaggatttcctta |
4579865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 20710027 - 20709981
Alignment:
| Q |
1 |
gcaccagaatcatcatgtgtggccggaaaagatgaagactcatctga |
47 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
20710027 |
gcaccggaatcatcatgtgtgaccggaagagatgaagactcatctga |
20709981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 36636915 - 36636973
Alignment:
| Q |
134 |
gattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataa |
192 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| ||||||||||| ||| ||||||||| |
|
|
| T |
36636915 |
gattattacacgtgtaaaacaaatctgatggttgtgaagtgtttatgtagggtacataa |
36636973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 5098804 - 5098760
Alignment:
| Q |
134 |
gattattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||||||| |
|
|
| T |
5098804 |
gattattacacgtgtacaataaatttgatggttgtgaagtgttta |
5098760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0238 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 25072 - 25300
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagt--gctttatgt---------tttagtgagagaaatgtttgaag |
95 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |
|
|
| T |
25072 |
gaatcatcatgtgtggccggaagagatgaagactcatctgaattgtagagagagggaaagctttatgtctttatgtttttagtgagagaaatgtttgaag |
25171 |
T |
|
| Q |
96 |
caaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaa |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||| ||||||||||| | ||||| ||||| | |
|
|
| T |
25172 |
caaatgaagtttgatttggtgtagtttgagaaacctaagattatgacacgtgtacactaaatctgatggttgtgaagtgtttatgcacggtgcataagga |
25271 |
T |
|
| Q |
196 |
tttccttatccaccgtaacttttgccaat |
224 |
Q |
| |
|
||||||||| |||| |||||||||||||| |
|
|
| T |
25272 |
tttccttatgcaccataacttttgccaat |
25300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 1e-64; HSPs: 19)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 638070 - 637882
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagag--agtgctttatgttttagtgagagaaatgtttgaagcaaatgaag |
104 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
638070 |
gaatcatcgtgtgtggccggaagagatgaagactcatctaaattgtagagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaag |
637971 |
T |
|
| Q |
105 |
tttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaa |
193 |
Q |
| |
|
||||||||||||||||||||| || |||| |||||||||| ||||||||| ||||||||||| ||||||||||| | ||||| |||||| |
|
|
| T |
637970 |
tttgatttggtgtagtttgagaagcctaaaattattacacatgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaa |
637882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 45256195 - 45255975
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg------ctttatgttttagtgagagaaatgtttgaagcaaat |
100 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45256195 |
gaatcatcctgtgtggccggaagagatgaagactcatctgaattgtagagagagagggggggagctttatgttttagtgagagaaatgtttgaagcaaat |
45256096 |
T |
|
| Q |
101 |
gaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttcc |
200 |
Q |
| |
|
||||||||||||| |||||||||| || ||| ||||||||||||||||||||| ||||||| ||| ||||||||||| | ||||| ||||| |||||| |
|
|
| T |
45256095 |
gaagtttgatttgatgtagtttgaaaagcctaggattattacacgtgtacactatatctgatagttgtgaagtgtttatgcacggtgcataaggatttcc |
45255996 |
T |
|
| Q |
201 |
ttatccaccgtaacttttgcc |
221 |
Q |
| |
|
|||| |||| ||||||||||| |
|
|
| T |
45255995 |
ttatgcaccataacttttgcc |
45255975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 26447259 - 26447477
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctttatgttttagtgagagaaatgtttgaagcaaatga |
102 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26447259 |
gaatcatcatgtgtggccggaagagatgaggactcatctgaattgtatagagagagggagaactttatgttttagtgagagaaatgtttgaagcaaatga |
26447358 |
T |
|
| Q |
103 |
agtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttcctt |
202 |
Q |
| |
|
| |||||||||||||| |||| | || ||| |||||||||||||||||||| ||||||||||| ||||||||||| | ||||| ||||| |||||||| |
|
|
| T |
26447359 |
aatttgatttggtgtaatttgtgaagcctagaattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaggatttcctt |
26447458 |
T |
|
| Q |
203 |
atccaccgtaacttttgcc |
221 |
Q |
| |
|
|| |||| | ||||||||| |
|
|
| T |
26447459 |
atgcaccattacttttgcc |
26447477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 7 - 178
Target Start/End: Original strand, 51836937 - 51837113
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctttatgttttagtgagagaaatgtttgaagcaaa-tg |
101 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
51836937 |
gaatcatcatgtgtggccggaagagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaaatgtttgaagtaaaatg |
51837036 |
T |
|
| Q |
102 |
aagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
|||||||||||||||||||||||| || ||| |||||||||||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
51837037 |
aagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacattaaatctgatggttgtgaagtattta |
51837113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 64 - 218
Target Start/End: Original strand, 22181153 - 22181307
Alignment:
| Q |
64 |
gctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatg |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||| |
|
|
| T |
22181153 |
gctttatgttttagtgagagaaatgtttgaggcaaatgaagtttgatttggtgtagtttgagaaacctaggattattacacgtgtacactaaatctgatg |
22181252 |
T |
|
| Q |
164 |
gttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaactttt |
218 |
Q |
| |
|
||| |||||| |||| | ||||| ||||| |||||||||| |||| |||||||| |
|
|
| T |
22181253 |
gttgtgaagtttttatgcacggtgcataaggatttccttatgcaccataactttt |
22181307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 65 - 223
Target Start/End: Complemental strand, 27764396 - 27764238
Alignment:
| Q |
65 |
ctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatgg |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| || || ||||||||||||||||||||| ||||||||| |
|
|
| T |
27764396 |
ctttatgttttagtgagagaaatgtttgaagcaaataaggtttgatttggtgtagtttgagaagcgtaggattattacacgtgtacactagatctgatgg |
27764297 |
T |
|
| Q |
165 |
ttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgccaa |
223 |
Q |
| |
|
|| |||||||||| | ||||| ||||| |||||||||| |||| ||||||||||||| |
|
|
| T |
27764296 |
ttgcgaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgccaa |
27764238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 64 - 192
Target Start/End: Complemental strand, 4168515 - 4168387
Alignment:
| Q |
64 |
gctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatg |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||| |||||||||| |||||||||| |||||||| |
|
|
| T |
4168515 |
gctttatgttttagtgagagaaatgtttgaaacaaatgaagtttgatttggtgtagtttgagaaacctaggattattacatgtgtacactagatctgatg |
4168416 |
T |
|
| Q |
164 |
gttatgaagtgtttacgtacggtacataa |
192 |
Q |
| |
|
||| ||||||||||| | ||||| ||||| |
|
|
| T |
4168415 |
gttgtgaagtgtttatgcacggtgcataa |
4168387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 53 - 221
Target Start/End: Complemental strand, 21097308 - 21097140
Alignment:
| Q |
53 |
agagagagagtgctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacac |
152 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || || ||||||||||||||| || |
|
|
| T |
21097308 |
agagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtaatttaataagcttagaattattacacgtgtaaac |
21097209 |
T |
|
| Q |
153 |
taaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc |
221 |
Q |
| |
|
|| |||| |||||| ||||||||||| ||||| ||||| |||||||||| ||| |||||||||||| |
|
|
| T |
21097208 |
tagatctaatggttgtgaagtgtttatacacggtgcataaggatttccttatgcacggtaacttttgcc |
21097140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 82 - 217
Target Start/End: Original strand, 36621627 - 36621762
Alignment:
| Q |
82 |
agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgt |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || || || |||||||||||||||||| || ||||||||||| ||||||||||| | |
|
|
| T |
36621627 |
agaaatgtttgaagcaaatgaagtttgatttggtgtagtttaagaagcataggattattacacgtgtacattagatctgatggttgtgaagtgtttatgc |
36621726 |
T |
|
| Q |
182 |
acggtacataaaaatttccttatccaccgtaacttt |
217 |
Q |
| |
|
||||| ||||| |||||||||| |||| ||||||| |
|
|
| T |
36621727 |
acggtgcataaggatttccttatgcaccataacttt |
36621762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 72 - 219
Target Start/End: Original strand, 38485590 - 38485733
Alignment:
| Q |
72 |
ttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaa |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |||||| || ||| |||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
38485590 |
ttttagtgagagaaatgtttgaagcaaatgaagtttgatttaatgtattttgagaagcctaggattattacacgtgtacattagatctgatggttgtgaa |
38485689 |
T |
|
| Q |
172 |
gtgtttacgtacggtacataaaaatttccttatccaccgtaacttttg |
219 |
Q |
| |
|
| ||||| | ||||| ||||| |||||||| |||| ||||||||| |
|
|
| T |
38485690 |
gcgtttatgcacggtgcataa----ttccttatgcaccataacttttg |
38485733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 18923414 - 18923355
Alignment:
| Q |
66 |
tttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgag |
125 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18923414 |
tttatgttttagtgacagaaatatttgaagcaaatgaagtttgatttggtgtagtttgag |
18923355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 50563679 - 50563751
Alignment:
| Q |
106 |
ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
50563679 |
ttgatttggtgtagtttgagaaacctataattattacacgtgtacactagatctgatggttgtgaagtgttta |
50563751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 50643810 - 50643742
Alignment:
| Q |
154 |
aaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcca |
222 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| ||||| |||||||||| |||| |||||||||||| |
|
|
| T |
50643810 |
aaatctgatggttatgaagtgtttatgcacggtgcataaggatttccttatgcaccataacttttgcca |
50643742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 27764494 - 27764451
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaatt |
50 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27764494 |
gaatcatcatgtgtggccggaagagatgaagactcatctgaatt |
27764451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 4168607 - 4168567
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctga |
47 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4168607 |
gaatcatcatgtgtggccggaagagatgaagactcatctga |
4168567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 6386519 - 6386563
Alignment:
| Q |
134 |
gattattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
6386519 |
gattattacacgtgtccactaaatctgatggttgtgaagtgttta |
6386563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 21097389 - 21097349
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctga |
47 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21097389 |
gaatcatcatgtgtggccggaagagatgaagactcatctga |
21097349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 18923506 - 18923466
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctga |
47 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
18923506 |
gaatcatcatgtgtggtcggaagagatgaagactcatctga |
18923466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 22181059 - 22181098
Alignment:
| Q |
4 |
ccagaatcatcatgtgtggccggaaaagatgaagactcat |
43 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
22181059 |
ccagaatcatcatgtgtggccggaagagatgaaaactcat |
22181098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 1e-61; HSPs: 15)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 15974783 - 15975004
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagag----agtgctttatgttttagtgagagaaatgtttgaagcaaatga |
102 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||| ||||| |||||| || |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15974783 |
gaatcatcatgtgtgatcggaagagatgaagactcatctgacttgtacagagagggagagagctttatgttttagtgagagaaatgtttgaagcagatga |
15974882 |
T |
|
| Q |
103 |
agtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttcctt |
202 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||||||||| ||||||||||||| |||||||| ||||||||||| | ||||| ||||| |||||||| |
|
|
| T |
15974883 |
agtttgatttggtgtactttgataagcctaagattattacatgtgtacactaaatatgatggttgtgaagtgtttatgcacggtgcataaggatttcctt |
15974982 |
T |
|
| Q |
203 |
atccaccgtaacttttgccaat |
224 |
Q |
| |
|
|| |||| |||||||||||||| |
|
|
| T |
15974983 |
atgcaccataacttttgccaat |
15975004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 8 - 192
Target Start/End: Original strand, 46573348 - 46573536
Alignment:
| Q |
8 |
aatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctttatgttttagtgagagaaatgtttgaagcaaatgaa |
103 |
Q |
| |
|
|||||||||||||| || ||| |||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46573348 |
aatcatcatgtgtgccctgaagagatgaagactcatctgaattgtagatagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaa |
46573447 |
T |
|
| Q |
104 |
gtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataa |
192 |
Q |
| |
|
|||||||||||||||||||||| || ||| ||||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||| |
|
|
| T |
46573448 |
gtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtgcataa |
46573536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 64 - 224
Target Start/End: Complemental strand, 30429030 - 30428870
Alignment:
| Q |
64 |
gctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatg |
163 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||| |||||||| |
|
|
| T |
30429030 |
gctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatg |
30428931 |
T |
|
| Q |
164 |
gttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgccaat |
224 |
Q |
| |
|
||| |||| |||||| | ||||| ||||| |||||||||| |||| |||||||||||||| |
|
|
| T |
30428930 |
gttgtgaaatgtttatgcacggtgcataaggatttccttatgcaccataacttttgccaat |
30428870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 65 - 223
Target Start/End: Complemental strand, 46024183 - 46024025
Alignment:
| Q |
65 |
ctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatgg |
164 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
46024183 |
ctttatgttttagtgagagaaatatttgaagcaaatgaagtttgatttaatgtagtttgagaagtctaggattattacacgtgtacactatatctgatgg |
46024084 |
T |
|
| Q |
165 |
ttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgccaa |
223 |
Q |
| |
|
|| ||||||||||| | ||||| ||||| |||| ||| | |||| ||||||||||||| |
|
|
| T |
46024083 |
ttgtgaagtgtttatgcacggtgcataaggattttcttgtgcaccataacttttgccaa |
46024025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 82 - 187
Target Start/End: Complemental strand, 33798070 - 33797965
Alignment:
| Q |
82 |
agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgt |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| |||| ||||||||||| |||| |||||| | |
|
|
| T |
33798070 |
agaaatgtttgaagcaaatgaagtttgatttgatgtagtttgagaagtctaggattattacacgtgtatactagatctgatggttgtgaaatgtttatgc |
33797971 |
T |
|
| Q |
182 |
acggta |
187 |
Q |
| |
|
|||||| |
|
|
| T |
33797970 |
acggta |
33797965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 48691202 - 48691112
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagaga----gagtgctttatgttttagtgagagaaatgtttga |
93 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||| |
|
|
| T |
48691202 |
gaatcatcatgtgtggccggaagagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaaatttttga |
48691112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 5757502 - 5757416
Alignment:
| Q |
106 |
ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataa |
192 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||| ||||||||||| | ||||| ||||| |
|
|
| T |
5757502 |
ttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataa |
5757416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 28396932 - 28396842
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagagagagtg----ctttatgttttagtgagagaaatgtttga |
93 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||| | |||||||||||| |||||||||||||||| |
|
|
| T |
28396932 |
gaatcatcatgtgtggccggaagagatgaagactcatctgaattgcagagagagagggagaactttatgttttattgagagaaatgtttga |
28396842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 48305446 - 48305356
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctgaattgtagagaga----gagtgctttatgttttagtgagagaaatgtttga |
93 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| |
|
|
| T |
48305446 |
gaatcatcatgtgtggccggaagtgatgaagactcatctgaattgtagagagagagggagagctttatgttttattgagagaaatgtttga |
48305356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 32090693 - 32090621
Alignment:
| Q |
106 |
ttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
|||||||||||||||||||| || ||| |||||||||||||||| |||| || |||||||| |||| |||||| |
|
|
| T |
32090693 |
ttgatttggtgtagtttgagaagcctatgattattacacgtgtatactagatttgatggttctgaattgttta |
32090621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 12279828 - 12279745
Alignment:
| Q |
138 |
attacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc |
221 |
Q |
| |
|
||||||||| ||||||| |||| |||||| |||||| |||| | ||||| |||||| |||||||||| |||| ||||||||||| |
|
|
| T |
12279828 |
attacacgtatacactagatctaatggttgtgaagtctttatgcacggtgcataaagatttccttatgcaccataacttttgcc |
12279745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 48690982 - 48690895
Alignment:
| Q |
134 |
gattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc |
221 |
Q |
| |
|
||||||||||||||||||||| || |||||||| |||| |||||| | ||||| ||||| ||||| |||| |||| ||||||||||| |
|
|
| T |
48690982 |
gattattacacgtgtacactagatttgatggttgtgaactgtttatgcacggtgcataaggatttctttatgcaccataacttttgcc |
48690895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 44141229 - 44141273
Alignment:
| Q |
134 |
gattattacacgtgtacactaaatctgatggttatgaagtgttta |
178 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
44141229 |
gattattacacgtgtacactaaatcagatggttgtgaagtgttta |
44141273 |
T |
|
Back To:
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Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 28396809 - 28396722
Alignment:
| Q |
134 |
gattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc |
221 |
Q |
| |
|
||||||||| | ||||||||| |||||||| || |||| |||||| | ||||| ||||| |||||||||| || ||||||||||||| |
|
|
| T |
28396809 |
gattattactcttgtacactagatctgatgattgtgaaatgtttatgcacggtgcataaggatttccttatgcatcgtaacttttgcc |
28396722 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 48691079 - 48691038
Alignment:
| Q |
134 |
gattattacacgtgtacactaaatctgatggttatgaagtgt |
175 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
48691079 |
gattattacacgtgtacactagatctgatggttgtgaagtgt |
48691038 |
T |
|
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Target: scaffold0097 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 13789 - 13612
Alignment:
| Q |
47 |
aattgtagagagagagtg--ctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacac |
144 |
Q |
| |
|
|||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||| |
|
|
| T |
13789 |
aattgtagagagagggagaactttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcgtaggattattacat |
13690 |
T |
|
| Q |
145 |
gtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcca |
222 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| | ||||| |||| |||||||||| |||| |||||||||||| |
|
|
| T |
13689 |
gtgtacactagatctgatggttgtgaagtgtttatgcacggtggataaggatttccttatgcaccataacttttgcca |
13612 |
T |
|
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Target: scaffold0097; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 13866 - 13820
Alignment:
| Q |
1 |
gcaccagaatcatcatgtgtggccggaaaagatgaagactcatctga |
47 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
13866 |
gcaccggaatcatcatgtgtgaccggaagagatgaagactcatctga |
13820 |
T |
|
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Target: scaffold0194 (Bit Score: 96; Significance: 1e-46; HSPs: 2)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 66 - 221
Target Start/End: Complemental strand, 27762 - 27607
Alignment:
| Q |
66 |
tttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaggagtctaagattattacacgtgtacactaaatctgatggt |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||| |||| || || |
|
|
| T |
27762 |
tttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctagaattattacacgtgtacactagatcttatagt |
27663 |
T |
|
| Q |
166 |
tatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgcc |
221 |
Q |
| |
|
| ||||||||||| | ||||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
27662 |
tgtgaagtgtttatgcacggtacataagtttttccttatgcaccataacttttgcc |
27607 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0194; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 27856 - 27816
Alignment:
| Q |
7 |
gaatcatcatgtgtggccggaaaagatgaagactcatctga |
47 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27856 |
gaatcatcatgtgtggccggaagagatgaagactcatctga |
27816 |
T |
|
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Target: scaffold0337 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0337
Description:
Target: scaffold0337; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 7104 - 7020
Alignment:
| Q |
134 |
gattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaactttt |
218 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| ||||||||||| | ||||| ||||| ||||| |||| |||| |||||||| |
|
|
| T |
7104 |
gattattacatgtgtacactagatctgatggttgtgaagtgtttatgcacggtgtataaagatttcgttatgcaccataactttt |
7020 |
T |
|
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Target: scaffold0544 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0544
Description:
Target: scaffold0544; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 10653 - 10739
Alignment:
| Q |
134 |
gattattacacgtgtacactaaatctgatggttatgaagtgtttacgtacggtacataaaaatttccttatccaccgtaacttttgc |
220 |
Q |
| |
|
|||||||||| || |||||| ||||||||||| ||||||||||| | ||||| |||| |||||||||| |||| |||||||||| |
|
|
| T |
10653 |
gattattacatatgcacactagatctgatggttgtgaagtgtttatgcacggtgtataaggatttccttatgcaccataacttttgc |
10739 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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