View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0612_low_10 (Length: 328)
Name: NF0612_low_10
Description: NF0612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0612_low_10 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 106 - 328
Target Start/End: Original strand, 49562358 - 49562580
Alignment:
| Q |
106 |
aatatgcactcacaacttatcaaagcagcagtcagcagaagctagcatcctccccccgatatagctttaatagacaatatgcttcctcctcaaaacgatt |
205 |
Q |
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| T |
49562358 |
aatatgcactcacaacttatcaaagcagcagtcagcagatgctagcatcctccccccgatatagctctaatagacaatatgcttcctcctcaaaacgatt |
49562457 |
T |
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| Q |
206 |
cacatacctttgcaggaacacctcatcagtcaaataaaatggtgcagttaagctagcatccttcttcatcaaacctttggaaagaagataccggataacc |
305 |
Q |
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| T |
49562458 |
cacatacctttgcaggaacacctcatcagtcaaataaaatggtgcagttaagctagcatccttcttcatcaaacctttggaaagaagataccggataact |
49562557 |
T |
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| Q |
306 |
gaagcccttggactaagcctttt |
328 |
Q |
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| T |
49562558 |
gaagcccttggactaagcctttt |
49562580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 49571296 - 49571428
Alignment:
| Q |
196 |
caaaacgattcacatacctttgcaggaacacctcatcagtcaaataaaatggtgcagttaagctagcatccttcttcatcaaacctttggaaagaagata |
295 |
Q |
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||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49571296 |
caaaacgtttcacatacctttgcaggaacagctcatccttcaaataaaatggtgcagttaagctagcatccttcttcatcaaacctttggaaagaagata |
49571395 |
T |
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| Q |
296 |
ccggataaccgaagcccttggactaagcctttt |
328 |
Q |
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| T |
49571396 |
ctggataacagaagcccttggactaagcctttt |
49571428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 167 - 328
Target Start/End: Original strand, 49558257 - 49558418
Alignment:
| Q |
167 |
tagctttaatagacaatatgcttcctcctcaaaacgattcacatacctttgcaggaacacctcatcagtcaaataaaatggtgcagttaagctagcatcc |
266 |
Q |
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| T |
49558257 |
tagctttaatagcttagatgtttcctcctcaaaacgtttcacataccttcgctggaaatcctcatcagttgcatgaaatggtgtgcataagctagaaccc |
49558356 |
T |
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| Q |
267 |
ttcttcatcaaacctttggaaagaagataccggataaccgaagcccttggactaagcctttt |
328 |
Q |
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| T |
49558357 |
ttcttcatcaaacctttggatagaagatacttgataactgaagcccttggaataagcctttt |
49558418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 328
Target Start/End: Complemental strand, 49905673 - 49905518
Alignment:
| Q |
163 |
gatatagctttaatagacaatatgcttcctcctcaaaacgattcacatacctttgcaggaacacctcatcagtcaaataaaatggtgcagttaagctagc |
262 |
Q |
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| T |
49905673 |
gatatagccttaatagcgtagatgcttcttcctcagaataattcacataccttttcaggaacaactcatcagtcaaagaaaatggtg----------agc |
49905584 |
T |
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| Q |
263 |
atccttcttcatcaaacctttggaaagaagataccggataaccgaagcccttggactaagcctttt |
328 |
Q |
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| T |
49905583 |
actcttcttcatcaaacctttagagagaagataccggataacagtagcccttggaataagcctttt |
49905518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 227 - 328
Target Start/End: Complemental strand, 49904951 - 49904850
Alignment:
| Q |
227 |
ctcatcagtcaaataaaatggtgcagttaagctagcatccttcttcatcaaacctttggaaagaagataccggataaccgaagcccttggactaagcctt |
326 |
Q |
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| T |
49904951 |
ctcatcagtcagataaaatggtgtacataagctagcaccctctttcatcaaacctttggatagaagatacttgacaattgatgcccttggactaagcctt |
49904852 |
T |
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| Q |
327 |
tt |
328 |
Q |
| |
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|| |
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| T |
49904851 |
tt |
49904850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 9441065 - 9441215
Alignment:
| Q |
146 |
gctagcatcctcccccc-gatatagctttaatagacaatatgcttcctcctcaaaacgattcacatacctttgcaggaacacctcatcagtcaaataaaa |
244 |
Q |
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||||| ||||||| ||| || ||||||||||||| || ||| || ||||||||||| | ||||||| ||| |||||| | |||||||| ||||||||| |
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| T |
9441065 |
gctagtatcctcctccctgacatagctttaatagccatgatgatttatcctcaaaacgttccacatacttttccaggaataactcatcagacaaataaaa |
9441164 |
T |
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| Q |
245 |
tggtgcagttaagctagcatccttcttcatcaaacctttggaaagaagata |
295 |
Q |
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| T |
9441165 |
tggtctagctaggctagaatcgtccttcatcaaacattcagaaagaagata |
9441215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 41487918 - 41488068
Alignment:
| Q |
146 |
gctagcatcctcccccc-gatatagctttaatagacaatatgcttcctcctcaaaacgattcacatacctttgcaggaacacctcatcagtcaaataaaa |
244 |
Q |
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||||||||| ||| ||| |||||||||||||||| || ||| || || |||||||| ||| ||||| |||||| || || || ||||| ||||||||| |
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| T |
41487918 |
gctagcatcatcctccctgatatagctttaatagccaggatggtttatcttcaaaacgtttcgcatacttttgcaagagcaactaatcagacaaataaaa |
41488017 |
T |
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| Q |
245 |
tggtgcagttaagctagcatccttcttcatcaaacctttggaaagaagata |
295 |
Q |
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||||| || |||||| | |||||||| || ||| | | |||||||||||| |
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| T |
41488018 |
tggtgtagctaagcttgagtccttcttaattaaatcatgggaaagaagata |
41488068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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