View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0612_low_17 (Length: 266)
Name: NF0612_low_17
Description: NF0612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0612_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 874296 - 874383
Alignment:
| Q |
31 |
acgataagagtttacgtgacattgttattgactgtgttgtgaatttggttcagcaaaggtaattcttacatgattgacacaaacaatg |
118 |
Q |
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| T |
874296 |
acgataagagtttacgtgacattgttattgactgtgttgtgaatttggttcagcaaaggtaattcttacatgattgacacaaacaatg |
874383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 877230 - 877279
Alignment:
| Q |
130 |
caactcataactcacttgatagaaatgttgtaaatttgagttcaaacccc |
179 |
Q |
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| T |
877230 |
caactcataactcacttgatagaaatgttgtaaatttgagtttaaacccc |
877279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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