View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0612_low_3 (Length: 423)
Name: NF0612_low_3
Description: NF0612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0612_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 247 - 420
Target Start/End: Complemental strand, 12933984 - 12933811
Alignment:
| Q |
247 |
tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta |
345 |
Q |
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| T |
12933984 |
tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt |
12933885 |
T |
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| Q |
346 |
cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaactgcagttttcacatcca |
420 |
Q |
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| T |
12933884 |
ct-caaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca |
12933811 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 397
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
| Q |
360 |
ggttgctccatataaatctcctcttccaaatctccatg |
397 |
Q |
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| T |
36999974 |
ggttgctccatataaatctcctcttccaagtcaccatg |
36999937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 247 - 420
Target Start/End: Original strand, 28608621 - 28608794
Alignment:
| Q |
247 |
tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta |
345 |
Q |
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||||||| || ||||| ||| | ||||| || |||||||| || || |||||||| | ||||| ||||||||||| |||| ||| | ||||| || || |
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| T |
28608621 |
tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt |
28608720 |
T |
|
| Q |
346 |
cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaactgcagttttcacatcca |
420 |
Q |
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| T |
28608721 |
ctt-aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca |
28608794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 420
Target Start/End: Complemental strand, 14177231 - 14177081
Alignment:
| Q |
270 |
taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc |
368 |
Q |
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||||| || |||||||| || || |||||||| | ||||| ||||||||||| |||| ||| | ||||| || || || |||||||||||||||| || |
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| T |
14177231 |
taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc |
14177133 |
T |
|
| Q |
369 |
atataaatctcctcttccaaatctccatgaagaactgcagttttcacatcca |
420 |
Q |
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| T |
14177132 |
atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca |
14177081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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